RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 ATP2A1O14983 1001 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 PGK1P00558 417 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 AKR1A1P14550 325 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 RNF180Q86T96 592 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 IFNL3Q8IZI9 196 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 ZNF444Q8N0Y2 327 aaPredicted RBP23.09■■□□□ 1.29
TRAF4-216ENST00000586813 SYNPO2Q9UMS6 1093 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 CNPY2Q9Y2B0 182 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 RIPK3Q9Y572 518 aa23.09■■□□□ 1.29
TRAF4-216ENST00000586813 PATL2C9JE40 543 aaKnown RBP23.08■■□□□ 1.29
TRAF4-216ENST00000586813 LRRC47Q8N1G4 583 aaKnown RBP23.08■■□□□ 1.29
TRAF4-216ENST00000586813 MSL3Q8N5Y2 521 aaKnown RBP23.08■■□□□ 1.29
TRAF4-216ENST00000586813 PI4K2BQ8TCG2 481 aa23.08■■□□□ 1.29
TRAF4-216ENST00000586813 MKL1Q969V6 931 aa23.08■■□□□ 1.29
TRAF4-216ENST00000586813 LENG1Q96BZ8 264 aaPredicted RBP23.08■■□□□ 1.29
TRAF4-216ENST00000586813 MTMR4Q9NYA4 1195 aa23.08■■□□□ 1.29
TRAF4-216ENST00000586813 SYNGAP1Q96PV0 1343 aa23.08■■□□□ 1.28
TRAF4-216ENST00000586813 DNAJC25-GNG10A0A024R161 153 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 POTEB2H3BUK9 544 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 ERC2O15083 957 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 FAM109BQ6ICB4 259 aaPredicted RBP23.07■■□□□ 1.28
TRAF4-216ENST00000586813 SH3RF1Q7Z6J0 888 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 CPXCR1Q8N123 301 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 GMCL1P1Q8NEA9 526 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 BADQ92934 168 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 KIFC2Q96AC6 838 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 DDX11Q96FC9 970 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 SEC62Q99442 399 aaKnown RBP23.07■■□□□ 1.28
TRAF4-216ENST00000586813 NACAP1Q9BZK3 213 aa23.07■■□□□ 1.28
TRAF4-216ENST00000586813 A0A1W2PQ45 241 aaPredicted RBP23.06■■□□□ 1.28
TRAF4-216ENST00000586813 A0A1W2PQY0 241 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 TRIM43BA6NCK2 446 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 ZBED4O75132 1171 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 ADAMTS4O75173 837 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 TTLL1O95922 423 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 TLE2Q04725 743 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 MAMDC4Q6UXC1 1216 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 OTUD7AQ8TE49 926 aaPredicted RBP23.06■■□□□ 1.28
TRAF4-216ENST00000586813 TRIM43Q96BQ3 446 aaPredicted RBP23.06■■□□□ 1.28
TRAF4-216ENST00000586813 FSD1Q9BTV5 496 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 SLC38A10Q9HBR0 1119 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 FEM1BQ9UK73 627 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 PCDHB15Q9Y5E8 787 aa23.06■■□□□ 1.28
TRAF4-216ENST00000586813 DLL1O00548 723 aa23.05■■□□□ 1.28
TRAF4-216ENST00000586813 SLC4A3P48751 1232 aa23.05■■□□□ 1.28
TRAF4-216ENST00000586813 SHHQ15465 462 aa23.05■■□□□ 1.28
TRAF4-216ENST00000586813 C9orf50Q5SZB4 431 aa23.05■■□□□ 1.28
TRAF4-216ENST00000586813 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.05■■□□□ 1.28
TRAF4-216ENST00000586813 RAVER2Q9HCJ3 691 aaKnown RBP23.05■■□□□ 1.28
TRAF4-216ENST00000586813 CTDP1Q9Y5B0 961 aaPredicted RBP23.05■■□□□ 1.28
TRAF4-216ENST00000586813 SYNRGQ9UMZ2 1314 aa23.05■■□□□ 1.28
TRAF4-216ENST00000586813 UNC80Q8N2C7 3258 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 SNAI1O95863 264 aaPredicted RBP23.04■■□□□ 1.28
TRAF4-216ENST00000586813 TSPY3P0CV98 308 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 TSPY8P0CW00 308 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 PDE4BQ07343 736 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 ZNF467Q7Z7K2 595 aaPredicted RBP23.04■■□□□ 1.28
TRAF4-216ENST00000586813 NEDD1Q8NHV4 660 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 GUCD1Q96NT3 240 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 NAPBQ9H115 298 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 ZHX1Q9UKY1 873 aaPredicted RBP23.04■■□□□ 1.28
TRAF4-216ENST00000586813 A0A0C4DFX4 3053 aa23.04■■□□□ 1.28
TRAF4-216ENST00000586813 SLC3A2P08195 630 aaKnown RBP23.03■■□□□ 1.28
TRAF4-216ENST00000586813 CLTBP09497 229 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 OAZ1P54368 228 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 PPARAQ07869 468 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 ZMYM1Q5SVZ6 1142 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 SLFN13Q68D06 897 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 TSEN34Q9BSV6 310 aaKnown RBP23.03■■□□□ 1.28
TRAF4-216ENST00000586813 FAM184BQ9ULE4 1060 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 TACC3Q9Y6A5 838 aa23.03■■□□□ 1.28
TRAF4-216ENST00000586813 LRRC37A2A6NM11 1700 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 PQBP1O60828 265 aaKnown RBP23.02■■□□□ 1.28
TRAF4-216ENST00000586813 BMP3P12645 472 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 MX1P20591 662 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 ANKRD35Q8N283 1001 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 FGD4Q96M96 766 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 FAM161BQ96MY7 647 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 FBXO40Q9UH90 709 aa23.02■■□□□ 1.28
TRAF4-216ENST00000586813 ITGB8P26012 769 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 ACLYP53396 1101 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 TFAP4Q01664 338 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 ZNF697Q5TEC3 545 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 KLHDC9Q8NEP7 349 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 CHST13Q8NET6 341 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.01■■□□□ 1.27
TRAF4-216ENST00000586813 CDH23Q9H251 3354 aa23.01■■□□□ 1.27
TRAF4-216ENST00000586813 MOXD2PA6NHM9 499 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 KIAA0355O15063 1070 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 DUSP11O75319 330 aaKnown RBP23■■□□□ 1.27
TRAF4-216ENST00000586813 STAT2P52630 851 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 ACVR2BQ13705 512 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 NUP133Q8WUM0 1156 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 STARD7Q9NQZ5 370 aa23■■□□□ 1.27
TRAF4-216ENST00000586813 ISY1Q9ULR0 285 aaKnown RBP23■■□□□ 1.27
TRAF4-216ENST00000586813 EYSQ5T1H1 3165 aa22.99■■□□□ 1.27
TRAF4-216ENST00000586813 MYADML2A6NDP7 307 aa22.99■■□□□ 1.27
TRAF4-216ENST00000586813 TMEM232C9JQI7 657 aa22.99■■□□□ 1.27
TRAF4-216ENST00000586813 FOXP2O15409 715 aa22.99■■□□□ 1.27
TRAF4-216ENST00000586813 FDX1P10109 184 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms