RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DGKZQ13574 1117 aa18.68■□□□□ 0.58
SS18-211ENST00000578954 LARP1BQ659C4 914 aaKnown RBP18.68■□□□□ 0.58
SS18-211ENST00000578954 PROCA1Q8NCQ7 364 aaPredicted RBP18.68■□□□□ 0.58
SS18-211ENST00000578954 CHURC1Q8WUH1 139 aa18.68■□□□□ 0.58
SS18-211ENST00000578954 RRP36Q96EU6 259 aaKnown RBP18.68■□□□□ 0.58
SS18-211ENST00000578954 WNK4Q96J92 1243 aa18.68■□□□□ 0.58
SS18-211ENST00000578954 ALG1Q9BT22 464 aa18.68■□□□□ 0.58
SS18-211ENST00000578954 TMOD4Q9NZQ9 345 aa18.68■□□□□ 0.58
SS18-211ENST00000578954 PARP14Q460N5 1801 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 hCG_1984214I3L0E3 225 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 STX6O43752 255 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 BRD1O95696 1058 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 SCG2P13521 617 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 SLC16A2P36021 539 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 NUCB2P80303 420 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 MOGSQ13724 837 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 ZNF713Q8N859 430 aaPredicted RBP18.67■□□□□ 0.58
SS18-211ENST00000578954 AIFM3Q96NN9 605 aa18.67■□□□□ 0.58
SS18-211ENST00000578954 ZBTB48P10074 688 aaPredicted RBP18.66■□□□□ 0.58
SS18-211ENST00000578954 HUNKP57058 714 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 PKP1Q13835 747 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 SAPCD2Q86UD0 394 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 FBXO18Q8NFZ0 1043 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 C8orf76Q96K31 380 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 PIGSQ96S52 555 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 RPAP3Q9H6T3 665 aaPredicted RBP18.66■□□□□ 0.58
SS18-211ENST00000578954 SH3GLB2Q9NR46 395 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 PRR12Q9ULL5 1215 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 MTMR6Q9Y217 621 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 TLL2Q9Y6L7 1015 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 RLFQ13129 1914 aa18.66■□□□□ 0.58
SS18-211ENST00000578954 PNMA6FA0A0J9YX94 578 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 hCG_1642624A0A1W2PR95 340 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 ZBTB5O15062 677 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 HOXA7P31268 230 aaPredicted RBP18.65■□□□□ 0.58
SS18-211ENST00000578954 SNAPC2Q13487 334 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 SPRYD7Q5W111 196 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 SHISA4Q96DD7 197 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 SLF1Q9BQI6 1058 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 RANBP17Q9H2T7 1088 aaKnown RBP18.65■□□□□ 0.58
SS18-211ENST00000578954 SEC63Q9UGP8 760 aaKnown RBP18.65■□□□□ 0.58
SS18-211ENST00000578954 PPP1R9AQ9ULJ8 1098 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 ISY1Q9ULR0 285 aaKnown RBP18.65■□□□□ 0.58
SS18-211ENST00000578954 ZDHHC9Q9Y397 364 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 MYPNQ86TC9 1320 aa18.65■□□□□ 0.58
SS18-211ENST00000578954 WDR33Q9C0J8 1336 aaKnown RBP18.65■□□□□ 0.58
SS18-211ENST00000578954 USP17L15C9J2P7 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L13C9JLJ4 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L11C9JVI0 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L18D6R9N7 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L22D6RA61 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L17D6RBQ6 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L19D6RCP7 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L20D6RJB6 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 FDX1P10109 184 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 USP17L24Q0WX57 530 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 CDC37Q16543 378 aaPredicted RBP18.64■□□□□ 0.57
SS18-211ENST00000578954 CATSPERGQ6ZRH7 1159 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 PRPF38AQ8NAV1 312 aaKnown RBP18.64■□□□□ 0.57
SS18-211ENST00000578954 HHIPL1Q96JK4 782 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 MS4A4AQ96JQ5 239 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 VAT1LQ9HCJ6 419 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 FBXO28Q9NVF7 368 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 BARHL2Q9NY43 387 aa18.64■□□□□ 0.57
SS18-211ENST00000578954 TMEM88BA6NKF7 163 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 XBP1P17861 261 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 GTF2A2P52657 109 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 IKQ13123 557 aaPredicted RBP18.63■□□□□ 0.57
SS18-211ENST00000578954 QRICH1Q2TAL8 776 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 KRT40Q6A162 431 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 WWC2Q6AWC2 1192 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 PPP1R18Q6NYC8 613 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 FASTKD5Q7L8L6 764 aaKnown RBP18.63■□□□□ 0.57
SS18-211ENST00000578954 HOMER1Q86YM7 354 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 RASAL3Q86YV0 1011 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 TANGO6Q9C0B7 1094 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 ADAMTS5Q9UNA0 930 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 AGTPBP1Q9UPW5 1226 aa18.63■□□□□ 0.57
SS18-211ENST00000578954 STXBP3O00186 592 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 PPP1R11O60927 126 aaPredicted RBP18.62■□□□□ 0.57
SS18-211ENST00000578954 ZSCAN22P10073 491 aaPredicted RBP18.62■□□□□ 0.57
SS18-211ENST00000578954 DSG3P32926 999 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 TREML2Q5T2D2 321 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 RGMBQ6NW40 437 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 CCDC148Q8NFR7 591 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 PIBF1Q8WXW3 757 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 KIFC2Q96AC6 838 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 PHF20Q9BVI0 1012 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 GJB4Q9NTQ9 266 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 VPS54Q9P1Q0 977 aa18.62■□□□□ 0.57
SS18-211ENST00000578954 A0A0G2JMZ2 1700 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 ESYT2A0FGR8 921 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 VPS37CA5D8V6 355 aaPredicted RBP18.61■□□□□ 0.57
SS18-211ENST00000578954 H3BQV1 296 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 FLOT1O75955 427 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 MMP1P03956 469 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 SLC10A3P09131 477 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 CETPP11597 493 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 TRIM29Q14134 588 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 COG2Q14746 738 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms