RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CLIP2Q9UDT6 1046 aa16.31■□□□□ 0.2
CCDC40-216ENST00000576241 RLFQ13129 1914 aa16.31■□□□□ 0.2
CCDC40-216ENST00000576241 BDP1A6H8Y1 2624 aa16.31■□□□□ 0.2
CCDC40-216ENST00000576241 DNM1LO00429 736 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 SEPT4O43236 478 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 PRDM1O75626 825 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 NDUFB10O96000 172 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 SMAD3P84022 425 aaKnown RBP16.3■□□□□ 0.2
CCDC40-216ENST00000576241 ZMYM1Q5SVZ6 1142 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 ARRDC4Q8NCT1 418 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 MAML3Q96JK9 1138 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 SEC62Q99442 399 aaKnown RBP16.3■□□□□ 0.2
CCDC40-216ENST00000576241 SENP6Q9GZR1 1112 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-216ENST00000576241 ZNF214Q9UL59 606 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-216ENST00000576241 SYNPO2Q9UMS6 1093 aa16.3■□□□□ 0.2
CCDC40-216ENST00000576241 CTDP1Q9Y5B0 961 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-216ENST00000576241 IGKV6D-41A0A0C4DH26 115 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 TSPY3P0CV98 308 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 TSPY8P0CW00 308 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 PRPF38AQ8NAV1 312 aaKnown RBP16.29■□□□□ 0.2
CCDC40-216ENST00000576241 CEP95Q96GE4 821 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 TEX13BQ9BXU2 312 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 MTMR4Q9NYA4 1195 aa16.29■□□□□ 0.2
CCDC40-216ENST00000576241 KBTBD13C9JR72 458 aa16.28■□□□□ 0.2
CCDC40-216ENST00000576241 TTLL1O95922 423 aa16.28■□□□□ 0.2
CCDC40-216ENST00000576241 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
CCDC40-216ENST00000576241 PPARAQ07869 468 aa16.28■□□□□ 0.2
CCDC40-216ENST00000576241 SNRNP48Q6IEG0 339 aaKnown RBP16.28■□□□□ 0.2
CCDC40-216ENST00000576241 REPS2Q8NFH8 660 aa16.28■□□□□ 0.2
CCDC40-216ENST00000576241 PRKAG2Q9UGJ0 569 aa16.28■□□□□ 0.2
CCDC40-216ENST00000576241 GREB1LQ9C091 1923 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 SALL3Q9BXA9 1300 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 ZBED4O75132 1171 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 PGK2P07205 417 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 ATN1P54259 1190 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 HDAC1Q13547 482 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 PRAMEF19Q5SWL8 479 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 GJC2Q5T442 439 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 ANO1Q5XXA6 986 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 LRRC47Q8N1G4 583 aaKnown RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 GMCL1P1Q8NEA9 526 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 NEDD1Q8NHV4 660 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 MKL1Q969V6 931 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 KIFC2Q96AC6 838 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 EVI5LQ96CN4 794 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 NRBP1Q9UHY1 535 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 FEM1BQ9UK73 627 aa16.27■□□□□ 0.2
CCDC40-216ENST00000576241 ISY1Q9ULR0 285 aaKnown RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 DIS3Q9Y2L1 958 aaKnown RBP16.27■□□□□ 0.2
CCDC40-216ENST00000576241 PLIN4Q96Q06 1357 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 FRMPD3Q5JV73 1810 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 SLC4A3P48751 1232 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 TFAP4Q01664 338 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 GRIN2CQ14957 1233 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 ZNF792Q3KQV3 632 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 FAM47AQ5JRC9 791 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 PPP4R3BQ5MIZ7 849 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 ADAMTS19Q8TE59 1207 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 DDX11Q96FC9 970 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 YTHDC1Q96MU7 727 aaKnown RBP16.26■□□□□ 0.19
CCDC40-216ENST00000576241 TINF2Q9BSI4 451 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 PARP14Q460N5 1801 aa16.26■□□□□ 0.19
CCDC40-216ENST00000576241 AAMPQ13685 434 aa16.25■□□□□ 0.19
CCDC40-216ENST00000576241 CCDC129Q6ZRS4 1044 aa16.25■□□□□ 0.19
CCDC40-216ENST00000576241 CPXCR1Q8N123 301 aa16.25■□□□□ 0.19
CCDC40-216ENST00000576241 CNPY2Q9Y2B0 182 aa16.25■□□□□ 0.19
CCDC40-216ENST00000576241 SYNGAP1Q96PV0 1343 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 TSPY2A6NKD2 308 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 ATP2A1O14983 1001 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 RARBP10826 455 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 BMP3P12645 472 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 PDE1AP54750 535 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 SLFN13Q68D06 897 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 ATXN2LQ8WWM7 1075 aaKnown RBP16.24■□□□□ 0.19
CCDC40-216ENST00000576241 ASB2Q96Q27 587 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 SLC38A10Q9HBR0 1119 aa16.24■□□□□ 0.19
CCDC40-216ENST00000576241 FDX1P10109 184 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 STAT2P52630 851 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 OAZ1P54368 228 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 RTP1P59025 263 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 IKQ13123 557 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-216ENST00000576241 LRRC41Q15345 812 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 MSL3Q8N5Y2 521 aaKnown RBP16.23■□□□□ 0.19
CCDC40-216ENST00000576241 BADQ92934 168 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 GMCL1Q96IK5 515 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 UHRF1Q96T88 793 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-216ENST00000576241 RAVER2Q9HCJ3 691 aaKnown RBP16.23■□□□□ 0.19
CCDC40-216ENST00000576241 XPNPEP3Q9NQH7 507 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 HELLSQ9NRZ9 838 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 FBXO40Q9UH90 709 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 STX8Q9UNK0 236 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 ATP11BQ9Y2G3 1177 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 RIPK3Q9Y572 518 aa16.23■□□□□ 0.19
CCDC40-216ENST00000576241 COL11A1P12107 1806 aaPredicted RBP16.22■□□□□ 0.19
CCDC40-216ENST00000576241 TMEM232C9JQI7 657 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 FOXP2O15409 715 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 AKR1A1P14550 325 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 ADCYAP1R1P41586 468 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 SLC1A4P43007 532 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 CTDSPL2Q05D32 466 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms