RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 CCDC81Q6ZN84 652 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 RUFY4Q6ZNE9 571 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 LSRQ86X29 649 aaPredicted RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 C7orf61Q8IZ16 206 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 FBXO15Q8NCQ5 510 aaPredicted RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 PPP1R16BQ96T49 567 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 NSUN3Q9H649 340 aaKnown RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 DCP1AQ9NPI6 582 aaPredicted RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 GFOD1Q9NXC2 390 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 GPR160Q9UJ42 338 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 TMEM82A0PJX8 343 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 C9IYK1 514 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 GJA8P48165 433 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 FZD5Q13467 585 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 TIGD5Q53EQ6 642 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 NOL9Q5SY16 702 aaKnown RBP5.21□□□□□ -1.58
NUP88-209ENST00000574855 SYDE1Q6ZW31 735 aaPredicted RBP5.21□□□□□ -1.58
NUP88-209ENST00000574855 MAP6Q96JE9 813 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 G6PC3Q9BUM1 346 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 DSCC1Q9BVC3 393 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 TGIF2Q9GZN2 237 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 SLC6A17Q9H1V8 727 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 EPB41L4BQ9H329 900 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 MINPP1Q9UNW1 487 aa5.21□□□□□ -1.58
NUP88-209ENST00000574855 YBX2Q9Y2T7 364 aaKnown RBP5.21□□□□□ -1.58
NUP88-209ENST00000574855 DBX1A6NMT0 343 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 PSPNO60542 156 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 TP53P04637 393 aaPredicted RBP5.2□□□□□ -1.58
NUP88-209ENST00000574855 GSNP06396 782 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 VAV1P15498 845 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 BMP8BP34820 402 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 RAP1GAPP47736 663 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 GIPRP48546 466 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 ZYXQ15942 572 aaKnown RBP5.2□□□□□ -1.58
NUP88-209ENST00000574855 TDRD10Q5VZ19 366 aaKnown RBP5.2□□□□□ -1.58
NUP88-209ENST00000574855 CEP128Q6ZU80 1094 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 IRF2BP1Q8IU81 584 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 OR6P1Q8NGX9 317 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 CPLX3Q8WVH0 158 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 SEC16BQ96JE7 1060 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 CDADC1Q9BWV3 514 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 SRRTQ9BXP5 876 aaKnown RBP5.2□□□□□ -1.58
NUP88-209ENST00000574855 TNFRSF10DQ9UBN6 386 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 ZNF214Q9UL59 606 aaPredicted RBP5.2□□□□□ -1.58
NUP88-209ENST00000574855 INPP5FQ9Y2H2 1132 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 SLC12A7Q9Y666 1083 aa5.2□□□□□ -1.58
NUP88-209ENST00000574855 SHOXO15266 292 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 NRDCO43847 1150 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 USP2O75604 605 aaPredicted RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 TMEM253P0C7T8 217 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 CD247P20963 164 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 CDK11BP21127 795 aaKnown RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 CTSKP43235 329 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 RTP1P59025 263 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 TCEAL1Q15170 157 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 AXDND1Q5T1B0 1012 aaPredicted RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 DCAF15Q66K64 600 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 CWF19L1Q69YN2 538 aaKnown RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 ZPBP2Q6X784 338 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 PPFIBP1Q86W92 1011 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 FCRL2Q96LA5 508 aaPredicted RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 SLC26A8Q96RN1 970 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 CCSER2Q9H7U1 834 aa5.19□□□□□ -1.58
NUP88-209ENST00000574855 CDK11AQ9UQ88 783 aaPredicted RBP5.19□□□□□ -1.58
NUP88-209ENST00000574855 NOTOA8MTQ0 251 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 NFIBO00712 420 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 ZNF205O95201 554 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 TSPAN15O95858 294 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 PDE6BP35913 854 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 NOP2P46087 812 aaKnown RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 NASPP49321 788 aaPredicted RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 ZNF445P59923 1031 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 GNPTABQ3T906 1256 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 NLRX1Q86UT6 975 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 ANKLE2Q86XL3 938 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 C19orf47Q8N9M1 422 aaKnown RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 KCNN1Q92952 543 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 SHISA4Q96DD7 197 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 INTS4Q96HW7 963 aaKnown RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 HHIPL1Q96JK4 782 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 ACBD3Q9H3P7 528 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 PHAXQ9H814 394 aaKnown RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 KCNK12Q9HB15 430 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 GP6Q9HCN6 339 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 CRTAC1Q9NQ79 661 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 FAM86C1Q9NVL1 165 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 SF3B6Q9Y3B4 125 aaKnown RBP5.18□□□□□ -1.58
NUP88-209ENST00000574855 LTBP3Q9NS15 1303 aa5.18□□□□□ -1.58
NUP88-209ENST00000574855 WTIPA6NIX2 430 aaPredicted RBP5.17□□□□□ -1.58
NUP88-209ENST00000574855 FADS2P1A8MWK0 482 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 HMGB1P09429 215 aaKnown RBP5.17□□□□□ -1.58
NUP88-209ENST00000574855 ITGA4P13612 1032 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 PPP2R5EQ16537 467 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 GALNT18Q6P9A2 607 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 CRTC3Q6UUV7 619 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 SIRT2Q8IXJ6 389 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 BRF1Q92994 677 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 KRTAP4-11Q9BYQ6 195 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 STRIP2Q9ULQ0 834 aa5.17□□□□□ -1.58
NUP88-209ENST00000574855 ZNF451Q9Y4E5 1061 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms