RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 CNPY2Q9Y2B0 182 aa17.17■□□□□ 0.34
CIITA-205ENST00000571186 SMARCA5O60264 1052 aaPredicted RBP17.16■□□□□ 0.34
CIITA-205ENST00000571186 DDX11Q96FC9 970 aa17.16■□□□□ 0.34
CIITA-205ENST00000571186 SUPT16HQ9Y5B9 1047 aaKnown RBP17.16■□□□□ 0.34
CIITA-205ENST00000571186 TTC28Q96AY4 2481 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 DCDC2CA8MYV0 355 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 ACLYP53396 1101 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 FPGSQ05932 587 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 UBE3CQ15386 1083 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 STK11IPQ8N1F8 1099 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 REPS2Q8NFH8 660 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 NUP133Q8WUM0 1156 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 NUP88Q99567 741 aaPredicted RBP17.15■□□□□ 0.34
CIITA-205ENST00000571186 TSEN34Q9BSV6 310 aaKnown RBP17.15■□□□□ 0.34
CIITA-205ENST00000571186 STARD7Q9NQZ5 370 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 FAM184BQ9ULE4 1060 aa17.15■□□□□ 0.34
CIITA-205ENST00000571186 ADAMTS4O75173 837 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 FAAP100Q0VG06 881 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 KCNA10Q16322 511 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 SNRNP48Q6IEG0 339 aaKnown RBP17.14■□□□□ 0.33
CIITA-205ENST00000571186 ZSCAN25Q6NSZ9 544 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 SLF1Q9BQI6 1058 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 PUS7LQ9H0K6 701 aaKnown RBP17.14■□□□□ 0.33
CIITA-205ENST00000571186 MKNK2Q9HBH9 465 aa17.14■□□□□ 0.33
CIITA-205ENST00000571186 CTDP1Q9Y5B0 961 aaPredicted RBP17.14■□□□□ 0.33
CIITA-205ENST00000571186 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.13■□□□□ 0.33
CIITA-205ENST00000571186 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.13■□□□□ 0.33
CIITA-205ENST00000571186 SNAI1O95863 264 aaPredicted RBP17.13■□□□□ 0.33
CIITA-205ENST00000571186 ANKRD33Q7Z3H0 272 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 CPXCR1Q8N123 301 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 MSL3Q8N5Y2 521 aaKnown RBP17.13■□□□□ 0.33
CIITA-205ENST00000571186 VTI1AQ96AJ9 217 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 TOX2Q96NM4 488 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.13■□□□□ 0.33
CIITA-205ENST00000571186 TEX13BQ9BXU2 312 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 ZHX1Q9UKY1 873 aaPredicted RBP17.13■□□□□ 0.33
CIITA-205ENST00000571186 RIPK3Q9Y572 518 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 SYNRGQ9UMZ2 1314 aa17.13■□□□□ 0.33
CIITA-205ENST00000571186 GREB1LQ9C091 1923 aaPredicted RBP17.12■□□□□ 0.33
CIITA-205ENST00000571186 TMEM265A0A087WTH1 108 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 MINDY4BA8MYZ0 360 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 F5H6K3 240 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 KLRC3Q07444 240 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 PRPF38AQ8NAV1 312 aaKnown RBP17.12■□□□□ 0.33
CIITA-205ENST00000571186 KLHDC9Q8NEP7 349 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 EXOC6Q8TAG9 804 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 ARPP21Q9UBL0 812 aaPredicted RBP17.12■□□□□ 0.33
CIITA-205ENST00000571186 SYNGAP1Q96PV0 1343 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 ROBO3Q96MS0 1386 aa17.12■□□□□ 0.33
CIITA-205ENST00000571186 MOXD2PA6NHM9 499 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 ZBED4O75132 1171 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 DUSP11O75319 330 aaKnown RBP17.11■□□□□ 0.33
CIITA-205ENST00000571186 TIMP1P01033 207 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 RASA1P20936 1047 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 DNAJB2P25686 324 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 GRIN2CQ14957 1233 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 MAMDC4Q6UXC1 1216 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 STRBPQ96SI9 672 aaKnown RBP17.11■□□□□ 0.33
CIITA-205ENST00000571186 LRRCC1Q9C099 1032 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 DCTPP1Q9H773 170 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 NYAP2Q9P242 653 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 CLIP2Q9UDT6 1046 aa17.11■□□□□ 0.33
CIITA-205ENST00000571186 DNAJC25-GNG10A0A024R161 153 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 MYADML2A6NDP7 307 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 NDUFB10O96000 172 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 C6orf222P0C671 652 aaPredicted RBP17.1■□□□□ 0.33
CIITA-205ENST00000571186 IRX5P78411 483 aaPredicted RBP17.1■□□□□ 0.33
CIITA-205ENST00000571186 IRX6P78412 446 aaPredicted RBP17.1■□□□□ 0.33
CIITA-205ENST00000571186 ACVR2BQ13705 512 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 SBK1Q52WX2 424 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 SYMPKQ92797 1274 aaKnown RBP17.1■□□□□ 0.33
CIITA-205ENST00000571186 KIFC2Q96AC6 838 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 GLT1D1Q96MS3 346 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.1■□□□□ 0.33
CIITA-205ENST00000571186 SPC25Q9HBM1 224 aa17.1■□□□□ 0.33
CIITA-205ENST00000571186 RAVER2Q9HCJ3 691 aaKnown RBP17.1■□□□□ 0.33
CIITA-205ENST00000571186 SPTBN5Q9NRC6 3674 aaKnown RBP17.09■□□□□ 0.33
CIITA-205ENST00000571186 GSG1L2A8MUP6 293 aa17.09■□□□□ 0.33
CIITA-205ENST00000571186 CCSAPQ6IQ19 270 aaPredicted RBP17.09■□□□□ 0.33
CIITA-205ENST00000571186 ANKRD35Q8N283 1001 aa17.09■□□□□ 0.33
CIITA-205ENST00000571186 PCSK9Q8NBP7 692 aaKnown RBP17.09■□□□□ 0.33
CIITA-205ENST00000571186 ZNF576Q9H609 170 aa17.09■□□□□ 0.33
CIITA-205ENST00000571186 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.09■□□□□ 0.33
CIITA-205ENST00000571186 ELP1O95163 1332 aa17.09■□□□□ 0.33
CIITA-205ENST00000571186 MROH7Q68CQ1 1323 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 ATP2A1O14983 1001 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 ASGR1P07306 291 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 PPIGQ13427 754 aaKnown RBP eCLIP17.08■□□□□ 0.32
CIITA-205ENST00000571186 CCDC144BQ3MJ40 725 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 GNASQ5JWF2 1037 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 MFSD5Q6N075 450 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 CCDC129Q6ZRS4 1044 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 ZNF467Q7Z7K2 595 aaPredicted RBP17.08■□□□□ 0.32
CIITA-205ENST00000571186 ZNF444Q8N0Y2 327 aaPredicted RBP17.08■□□□□ 0.32
CIITA-205ENST00000571186 TIFAQ96CG3 184 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 ABHD16BQ9H3Z7 469 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 TBX21Q9UL17 535 aa17.08■□□□□ 0.32
CIITA-205ENST00000571186 CDK7P50613 346 aa17.07■□□□□ 0.32
CIITA-205ENST00000571186 GIMAP6Q6P9H5 292 aa17.07■□□□□ 0.32
CIITA-205ENST00000571186 CCDC174Q6PII3 467 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms