RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CCL23P55773 120 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 ICA1Q05084 483 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 MTX1Q13505 466 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 CSPP1Q1MSJ5 1256 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 TNNI3KQ59H18 835 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 TMEM67Q5HYA8 995 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 FAM126BQ8IXS8 530 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 VCPKMTQ9H867 229 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 CERS4Q9HA82 394 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 FPGT-TNNI3KV9GXZ4 949 aa13.42□□□□□ -0.26
VPS53-207ENST00000570510 MYADML2A6NDP7 307 aa13.41□□□□□ -0.26
VPS53-207ENST00000570510 GNAI2P04899 355 aa13.41□□□□□ -0.26
VPS53-207ENST00000570510 CST5P28325 142 aaPredicted RBP13.41□□□□□ -0.26
VPS53-207ENST00000570510 ACVR2BQ13705 512 aa13.41□□□□□ -0.26
VPS53-207ENST00000570510 DIEXFQ68CQ4 756 aaKnown RBP13.41□□□□□ -0.26
VPS53-207ENST00000570510 CCSAPQ6IQ19 270 aaPredicted RBP13.41□□□□□ -0.26
VPS53-207ENST00000570510 CRNKL1Q9BZJ0 848 aaKnown RBP13.41□□□□□ -0.26
VPS53-207ENST00000570510 MTCH2Q9Y6C9 303 aa13.41□□□□□ -0.26
VPS53-207ENST00000570510 MAGEB6P1A0A0J9YX57 407 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 RFXAPO00287 272 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 TLL1O43897 1013 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 MRE11P49959 708 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 KIAA1755Q5JYT7 1200 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 GOPCQ9HD26 462 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 GPR108Q9NPR9 543 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 SWAP70Q9UH65 585 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 TMX2Q9Y320 296 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 MYH1P12882 1939 aa13.4□□□□□ -0.26
VPS53-207ENST00000570510 PIEZO1Q92508 2521 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 KIF28PB7ZC32 967 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 VWA5AO00534 786 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 SNAI1O95863 264 aaPredicted RBP13.39□□□□□ -0.27
VPS53-207ENST00000570510 CA3P07451 260 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 GJA9P57773 515 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 CCDC144BQ3MJ40 725 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 TMED8Q6PL24 325 aaPredicted RBP13.39□□□□□ -0.27
VPS53-207ENST00000570510 AMOTL1Q8IY63 956 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 ARNTL2Q8WYA1 636 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 ZNF512BQ96KM6 892 aaPredicted RBP13.39□□□□□ -0.27
VPS53-207ENST00000570510 SNX27Q96L92 541 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 ABHD16BQ9H3Z7 469 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 CDK5RAP2Q96SN8 1893 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 FOCADQ5VW36 1801 aa13.39□□□□□ -0.27
VPS53-207ENST00000570510 PRR33A8MZF0 331 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 PI4K2BG5E9Z4 385 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 ZEB2O60315 1214 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 CABYRO75952 493 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 CD4P01730 458 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 CT47B1P0C2W7 299 aaPredicted RBP13.38□□□□□ -0.27
VPS53-207ENST00000570510 ACTN1P12814 892 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 SSTR3P32745 418 aaPredicted RBP13.38□□□□□ -0.27
VPS53-207ENST00000570510 IRX5P78411 483 aaPredicted RBP13.38□□□□□ -0.27
VPS53-207ENST00000570510 GABPAQ06546 454 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 SNRNP48Q6IEG0 339 aaKnown RBP13.38□□□□□ -0.27
VPS53-207ENST00000570510 ANKRD35Q8N283 1001 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 TEX13BQ9BXU2 312 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 FBXO28Q9NVF7 368 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.38□□□□□ -0.27
VPS53-207ENST00000570510 PPP1R9AQ9ULJ8 1098 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 CHD9Q3L8U1 2897 aa13.38□□□□□ -0.27
VPS53-207ENST00000570510 PNMA6EA0A0J9YXQ4 647 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 SURF6O75683 361 aaKnown RBP13.37□□□□□ -0.27
VPS53-207ENST00000570510 POU3F3P20264 500 aaPredicted RBP13.37□□□□□ -0.27
VPS53-207ENST00000570510 BEX3Q00994 111 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 ITGA7Q13683 1181 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 CXCL17Q6UXB2 119 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 MAMDC4Q6UXC1 1216 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 CLEC10AQ8IUN9 316 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 CCDC17Q96LX7 622 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 SEZ6LQ9BYH1 1024 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 AP5M1Q9H0R1 490 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 UPF3AQ9H1J1 476 aaKnown RBP13.37□□□□□ -0.27
VPS53-207ENST00000570510 C11orf16Q9NQ32 467 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 ADAMTS5Q9UNA0 930 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 UMODL1Q5DID0 1318 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 MUC6Q6W4X9 2439 aa13.37□□□□□ -0.27
VPS53-207ENST00000570510 PFKMP08237 780 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 AKR1B1P15121 316 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 SLFN5Q08AF3 891 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 FAM83BQ5T0W9 1011 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 KRT40Q6A162 431 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 DEFB128Q7Z7B8 93 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 ZNF467Q7Z7K2 595 aaPredicted RBP13.36□□□□□ -0.27
VPS53-207ENST00000570510 CPXCR1Q8N123 301 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 SCLYQ96I15 445 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 NOC4LQ9BVI4 516 aaKnown RBP13.36□□□□□ -0.27
VPS53-207ENST00000570510 CCDC8Q9H0W5 538 aaPredicted RBP13.36□□□□□ -0.27
VPS53-207ENST00000570510 TRPV6Q9H1D0 765 aa13.36□□□□□ -0.27
VPS53-207ENST00000570510 ZNF214Q9UL59 606 aaPredicted RBP13.36□□□□□ -0.27
VPS53-207ENST00000570510 ZNFX1Q9P2E3 1918 aaKnown RBP13.35□□□□□ -0.27
VPS53-207ENST00000570510 ZBED4O75132 1171 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 EEF2P13639 858 aaKnown RBP13.35□□□□□ -0.27
VPS53-207ENST00000570510 ALADP13716 330 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 TNFAIP2Q03169 654 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 SLC9C2Q5TAH2 1124 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 KHSRPQ92945 711 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS53-207ENST00000570510 DYNLL2Q96FJ2 89 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 DDRGK1Q96HY6 314 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 RIOK1Q9BRS2 568 aaKnown RBP13.35□□□□□ -0.27
VPS53-207ENST00000570510 KANSL2Q9H9L4 492 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms