RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, human

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH11-216	ENST00000569128	NRSN2	Q9GZP1	204 aa		10.19	□□□□□ -0.78
CDH11-216	ENST00000569128	PARP4	Q9UKK3	1724 aa	Known RBP	10.19	□□□□□ -0.78
CDH11-216	ENST00000569128	EXOC5	O00471	708 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	RNMT	O43148	476 aa	Known RBP	10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	ADAM11	O75078	769 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	FGR	P09769	529 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	ZNF252P-AS1	Q0IIN9	211 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	C1orf141	Q5JVX7	400 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	MAP1S	Q66K74	1059 aa	Predicted RBP	10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	MCF2L2	Q86YR7	1114 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	KIAA0825	Q8IV33	1275 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	IFNL2	Q8IZJ0	200 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	MIS18A	Q9NYP9	233 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	LAS1L	Q9Y4W2	734 aa	Known RBP	10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	PKD1L3	Q7Z443	1732 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	SHANK3	Q9BYB0	1731 aa		10.18	□□□□□ -0.78
CDH11-216	ENST00000569128	WNK3	Q9BYP7	1800 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	CNTNAP5	Q8WYK1	1306 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	EIF4EBP3	O60516	100 aa	Predicted RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	CTSB	P07858	339 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	SLFN5	Q08AF3	891 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	PAK2	Q13177	524 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	SEPT6	Q14141	434 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	DDB1	Q16531	1140 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	SNAP47	Q5SQN1	464 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	ZNF772	Q68DY9	489 aa	Predicted RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	ZNF746	Q6NUN9	644 aa	Predicted RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	FBXL19	Q6PCT2	694 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	FBXO11	Q86XK2	927 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	WDR63	Q8IWG1	891 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	NLGN1	Q8N2Q7	840 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	NGEF	Q8N5V2	710 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	MARCH10	Q8NA82	808 aa	Predicted RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	GOLM1	Q8NBJ4	401 aa		10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	RTF1	Q92541	710 aa	Known RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	JARID2	Q92833	1246 aa	Predicted RBP	10.17	□□□□□ -0.78
CDH11-216	ENST00000569128	KDM6A	O15550	1401 aa	Predicted RBP	10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	HTATSF1	O43719	755 aa	Known RBP	10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	EIF5B	O60841	1220 aa	Known RBP	10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	GART	P22102	1010 aa		10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	GJA8	P48165	433 aa		10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	LMOD3	Q0VAK6	560 aa		10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	TRIM28	Q13263	835 aa	Known RBP	10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	PODN	Q7Z5L7	613 aa		10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	TSR2	Q969E8	191 aa	Known RBP	10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	MIR1-1HG	Q9H1L0	117 aa		10.16	□□□□□ -0.78
CDH11-216	ENST00000569128	PCDH11X	Q9BZA7	1347 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	PCDH11Y	Q9BZA8	1340 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	LOC100289279	A0A1B0GTE1	492 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	SPDYE3	A6NKU9	549 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	PIK3R2	O00459	728 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	DLL1	O00548	723 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	ZNF853	P0CG23	659 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	PTPN11	Q06124	597 aa	Predicted RBP	10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	PDE3A	Q14432	1141 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	BNC2	Q6ZN30	1099 aa	Predicted RBP	10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	TRIM42	Q8IWZ5	723 aa		10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	TRMT2A	Q8IZ69	625 aa	Known RBP	10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	CCDC86	Q9H6F5	360 aa	Known RBP	10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.15	□□□□□ -0.78
CDH11-216	ENST00000569128	TNS2	Q63HR2	1409 aa		10.15	□□□□□ -0.79
CDH11-216	ENST00000569128	LRRC37A3	O60309	1634 aa		10.15	□□□□□ -0.79
CDH11-216	ENST00000569128	KCNQ3	O43525	872 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	RBM6	P78332	1123 aa	Known RBP	10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	DUSP27	Q5VZP5	1158 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	BEND7	Q8N7W2	519 aa	Predicted RBP	10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	UBASH3B	Q8TF42	649 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	GAL3ST3	Q96A11	431 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	EAF1	Q96JC9	268 aa	Predicted RBP	10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	KCNQ5	Q9NR82	932 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	THSD7A	Q9UPZ6	1657 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	CEMIP	Q8WUJ3	1361 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	PLEKHG2	Q9H7P9	1386 aa		10.14	□□□□□ -0.79
CDH11-216	ENST00000569128	IL16	Q14005	1332 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	CHL1	O00533	1208 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	TRIM37	O94972	964 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	DLGAP3	O95886	979 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	F13A1	P00488	732 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	ATF4	P18848	351 aa	Predicted RBP	10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	RXRB	P28702	533 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	INSM1	Q01101	510 aa	Predicted RBP	10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	TAF7	Q15545	349 aa	Predicted RBP	10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	DUOXA2	Q1HG44	320 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	GPBAR1	Q8TDU6	330 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	GPRASP2	Q96D09	838 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	ACSBG1	Q96GR2	724 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	DCAF5	Q96JK2	942 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	UBP1	Q9NZI7	540 aa		10.13	□□□□□ -0.79
CDH11-216	ENST00000569128	VIRMA	Q69YN4	1812 aa	Known RBP	10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	FANCI	Q9NVI1	1328 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	SCN11A	Q9UI33	1791 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	GREM1	O60565	184 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	WISP1	O95388	367 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	HSP90AB1	P08238	724 aa	Known RBP	10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	TEF	Q10587	303 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	SLC39A6	Q13433	755 aa		10.12	□□□□□ -0.79
CDH11-216	ENST00000569128	BMS1	Q14692	1282 aa	Known RBP	10.12	□□□□□ -0.79

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