RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ATP2A1O14983 1001 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 APPP05067 770 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 AKR1A1P14550 325 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 LRRFIP1Q32MZ4 808 aaKnown RBP17.81■□□□□ 0.44
CLN3-236ENST00000568558 ZNF444Q8N0Y2 327 aaPredicted RBP17.81■□□□□ 0.44
CLN3-236ENST00000568558 PI4K2BQ8TCG2 481 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 MKL1Q969V6 931 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 CEP95Q96GE4 821 aa17.81■□□□□ 0.44
CLN3-236ENST00000568558 DNAJC25-GNG10A0A024R161 153 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 PGK1P00558 417 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 RNF180Q86T96 592 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 MSL3Q8N5Y2 521 aaKnown RBP17.8■□□□□ 0.44
CLN3-236ENST00000568558 SEC62Q99442 399 aaKnown RBP17.8■□□□□ 0.44
CLN3-236ENST00000568558 MTMR4Q9NYA4 1195 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 SYNPO2Q9UMS6 1093 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 CNPY2Q9Y2B0 182 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 PCDHB15Q9Y5E8 787 aa17.8■□□□□ 0.44
CLN3-236ENST00000568558 SYNGAP1Q96PV0 1343 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 POTEB2H3BUK9 544 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 ERC2O15083 957 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 ZBED4O75132 1171 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 ADAMTS4O75173 837 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 TTLL1O95922 423 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 TLE2Q04725 743 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 FAM109BQ6ICB4 259 aaPredicted RBP17.79■□□□□ 0.44
CLN3-236ENST00000568558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLN3-236ENST00000568558 SH3RF1Q7Z6J0 888 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 CPXCR1Q8N123 301 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 LRRC47Q8N1G4 583 aaKnown RBP17.79■□□□□ 0.44
CLN3-236ENST00000568558 OTUD7AQ8TE49 926 aaPredicted RBP17.79■□□□□ 0.44
CLN3-236ENST00000568558 BADQ92934 168 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 KIFC2Q96AC6 838 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 LENG1Q96BZ8 264 aaPredicted RBP17.79■□□□□ 0.44
CLN3-236ENST00000568558 DDX11Q96FC9 970 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 NACAP1Q9BZK3 213 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 SLC38A10Q9HBR0 1119 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 FEM1BQ9UK73 627 aa17.79■□□□□ 0.44
CLN3-236ENST00000568558 LRRC37A2A6NM11 1700 aa17.78■□□□□ 0.44
CLN3-236ENST00000568558 MAMDC4Q6UXC1 1216 aa17.78■□□□□ 0.44
CLN3-236ENST00000568558 GMCL1P1Q8NEA9 526 aa17.78■□□□□ 0.44
CLN3-236ENST00000568558 NEDD1Q8NHV4 660 aa17.78■□□□□ 0.44
CLN3-236ENST00000568558 FSD1Q9BTV5 496 aa17.78■□□□□ 0.44
CLN3-236ENST00000568558 RAVER2Q9HCJ3 691 aaKnown RBP17.78■□□□□ 0.44
CLN3-236ENST00000568558 CTDP1Q9Y5B0 961 aaPredicted RBP17.78■□□□□ 0.44
CLN3-236ENST00000568558 SYNRGQ9UMZ2 1314 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 A0A1W2PQ45 241 aaPredicted RBP17.77■□□□□ 0.44
CLN3-236ENST00000568558 A0A1W2PQY0 241 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 TRIM43BA6NCK2 446 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 SNAI1O95863 264 aaPredicted RBP17.77■□□□□ 0.44
CLN3-236ENST00000568558 TSPY3P0CV98 308 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 TSPY8P0CW00 308 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 SLC4A3P48751 1232 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 PDE4BQ07343 736 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 SHHQ15465 462 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 ZMYM1Q5SVZ6 1142 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 C9orf50Q5SZB4 431 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 ZNF467Q7Z7K2 595 aaPredicted RBP17.77■□□□□ 0.44
CLN3-236ENST00000568558 TRIM43Q96BQ3 446 aaPredicted RBP17.77■□□□□ 0.44
CLN3-236ENST00000568558 NAPBQ9H115 298 aa17.77■□□□□ 0.44
CLN3-236ENST00000568558 LCTP09848 1927 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 DLL1O00548 723 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 CLTBP09497 229 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 BMP3P12645 472 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 OAZ1P54368 228 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 PPARAQ07869 468 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 SLFN13Q68D06 897 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 YTHDC1Q96MU7 727 aaKnown RBP17.76■□□□□ 0.43
CLN3-236ENST00000568558 GUCD1Q96NT3 240 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 TSEN34Q9BSV6 310 aaKnown RBP17.76■□□□□ 0.43
CLN3-236ENST00000568558 FBXO40Q9UH90 709 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 FAM184BQ9ULE4 1060 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 TACC3Q9Y6A5 838 aa17.76■□□□□ 0.43
CLN3-236ENST00000568558 SALL3Q9BXA9 1300 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 SLC3A2P08195 630 aaKnown RBP17.75■□□□□ 0.43
CLN3-236ENST00000568558 MX1P20591 662 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 ACLYP53396 1101 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 TFAP4Q01664 338 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 ANKRD35Q8N283 1001 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 KLHDC9Q8NEP7 349 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 CHST13Q8NET6 341 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 FGD4Q96M96 766 aa17.75■□□□□ 0.43
CLN3-236ENST00000568558 ZHX1Q9UKY1 873 aaPredicted RBP17.75■□□□□ 0.43
CLN3-236ENST00000568558 UNC80Q8N2C7 3258 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 MOXD2PA6NHM9 499 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 FDX1P10109 184 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 ITGB8P26012 769 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 ACVR2BQ13705 512 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 ZNF697Q5TEC3 545 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 STARD7Q9NQZ5 370 aa17.74■□□□□ 0.43
CLN3-236ENST00000568558 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.74■□□□□ 0.43
CLN3-236ENST00000568558 CDH23Q9H251 3354 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 MYADML2A6NDP7 307 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 TMEM232C9JQI7 657 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 KIAA0355O15063 1070 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 FOXP2O15409 715 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 PQBP1O60828 265 aaKnown RBP17.73■□□□□ 0.43
CLN3-236ENST00000568558 DUSP11O75319 330 aaKnown RBP17.73■□□□□ 0.43
CLN3-236ENST00000568558 STAT2P52630 851 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 CCSAPQ6IQ19 270 aaPredicted RBP17.73■□□□□ 0.43
CLN3-236ENST00000568558 NUP133Q8WUM0 1156 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms