RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 FRMPD2Q68DX3 1309 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 PALM3A6NDB9 673 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 PARP1P09874 1014 aaKnown RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 GOLGA8HP0CJ92 632 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CETPP11597 493 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 BMP3P12645 472 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CDC27P30260 824 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 KIF5BP33176 963 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 ST3GAL1Q11201 340 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 SCRN1Q12765 414 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 PPP2R5BQ15173 497 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 RTN1Q16799 776 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CCDC96Q2M329 555 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 DEFB115Q30KQ5 88 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 ASPRV1Q53RT3 343 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 FAM83BQ5T0W9 1011 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 GPATCH4Q5T3I0 446 aaKnown RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CYP4F22Q6NT55 531 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 KCTD1Q719H9 257 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 FASTKD5Q7L8L6 764 aaKnown RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 STAG2Q8N3U4 1231 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 NECAB1Q8N987 351 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CTCFLQ8NI51 663 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 GTF3C6Q969F1 213 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CRISPLD2Q9H0B8 497 aa9.85□□□□□ -0.83
SF3B3-212ENST00000568539 SLKQ9H2G2 1235 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 NCOA5Q9HCD5 579 aaKnown RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 SH2B1Q9NRF2 756 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 RBM19Q9Y4C8 960 aaKnown RBP9.85□□□□□ -0.83
SF3B3-212ENST00000568539 CCL15-CCL14A0A0B4J2E2 113 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 CCDC196A0A1B0GTZ2 297 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TESPA1A2RU30 521 aaPredicted RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TTLL13PA6NNM8 815 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 KLRF2D3W0D1 207 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 K7ELQ4 463 aaPredicted RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 PLA2G6O60733 806 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 PLEKHA8P1O95397 391 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 ADD1P35611 737 aaKnown RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 LBX1P52954 281 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 CCT2P78371 535 aaKnown RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 FUT2Q10981 343 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 CCL15Q16663 113 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 SLC35G1Q2M3R5 365 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TREML2Q5T2D2 321 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TTBK2Q6IQ55 1244 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 GPAT2Q6NUI2 795 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 BTNL9Q6UXG8 535 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 GADL1Q6ZQY3 521 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TMTC3Q6ZXV5 915 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 HSCBQ8IWL3 235 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 BRI3BPQ8WY22 251 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 RPAP3Q9H6T3 665 aaPredicted RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 GPCPD1Q9NPB8 672 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 RBM28Q9NW13 759 aaKnown RBP9.84□□□□□ -0.83
SF3B3-212ENST00000568539 AGTPBP1Q9UPW5 1226 aa9.84□□□□□ -0.83
SF3B3-212ENST00000568539 TRPM7Q96QT4 1865 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 MANSC4A6NHS7 340 aaPredicted RBP9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L15C9J2P7 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L13C9JLJ4 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 TMEM232C9JQI7 657 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L11C9JVI0 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L18D6R9N7 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L22D6RA61 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L17D6RBQ6 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L19D6RCP7 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L20D6RJB6 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 SMARCA1P28370 1054 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 HOXA7P31268 230 aaPredicted RBP9.83□□□□□ -0.84
SF3B3-212ENST00000568539 SLC16A2P36021 539 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 GNAQP50148 359 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 USP17L24Q0WX57 530 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CUL4AQ13619 759 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 NTRK3Q16288 839 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CATSPERGQ6ZRH7 1159 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 ANKRD23Q86SG2 305 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 NBPF11Q86T75 865 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CCDC83Q8IWF9 413 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CMTR1Q8N1G2 835 aaKnown RBP9.83□□□□□ -0.84
SF3B3-212ENST00000568539 SRBD1Q8N5C6 995 aaKnown RBP9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CAPNS2Q96L46 248 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 PTPN18Q99952 460 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 LZTS2Q9BRK4 669 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 TANGO6Q9C0B7 1094 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 UBA5Q9GZZ9 404 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 CPVLQ9H3G5 476 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 FBXO28Q9NVF7 368 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 FEM1BQ9UK73 627 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 ATAD5Q96QE3 1844 aa9.83□□□□□ -0.84
SF3B3-212ENST00000568539 PHIPQ8WWQ0 1821 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 BTBD19C9JJ37 291 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 CYTH3O43739 400 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 DHX16O60231 1041 aaKnown RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 CTDNEP1O95476 244 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 IFNAR1P17181 557 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 ANP32AP39687 249 aaKnown RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 STAT2P52630 851 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 INHBEP58166 350 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 KIF23Q02241 960 aaPredicted RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 MLLT1Q03111 559 aaPredicted RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 NOGQ13253 232 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms