RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 GBF1Q92538 1859 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 MOXD2PA6NHM9 499 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 TRIM6-TRIM34B2RNG4 842 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 CYP2E1P05181 493 aaPredicted RBP13.55□□□□□ -0.24
CLN3-226ENST00000567160 FCER1AP12319 257 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 GSPT1P15170 499 aaKnown RBP13.55□□□□□ -0.24
CLN3-226ENST00000567160 SKIV2LQ15477 1246 aaKnown RBP13.55□□□□□ -0.24
CLN3-226ENST00000567160 MICALL1Q8N3F8 863 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 RILPL2Q969X0 211 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 EPHX3Q9H6B9 360 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 PIH1D3Q9NQM4 214 aaKnown RBP13.55□□□□□ -0.24
CLN3-226ENST00000567160 SAP30BPQ9UHR5 308 aaKnown RBP13.55□□□□□ -0.24
CLN3-226ENST00000567160 TBX21Q9UL17 535 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 XIRP2A4UGR9 3374 aa13.55□□□□□ -0.24
CLN3-226ENST00000567160 A0A0G2JMZ2 1700 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 AKR1A1P14550 325 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 ACLYP53396 1101 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 TFF2Q03403 129 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 ABCB5Q2M3G0 1257 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 CERKLQ49MI3 558 aaPredicted RBP13.54□□□□□ -0.24
CLN3-226ENST00000567160 TATDN1Q6P1N9 297 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 ALYREFQ86V81 257 aaKnown RBP13.54□□□□□ -0.24
CLN3-226ENST00000567160 NCAPG2Q86XI2 1143 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 TANGO6Q9C0B7 1094 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 NKX2-4Q9H2Z4 354 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 SERPINB13Q9UIV8 391 aa13.54□□□□□ -0.24
CLN3-226ENST00000567160 GPR37L1O60883 481 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 IGSF3O75054 1194 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 CSF2RAP15509 400 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 KCNQ1P51787 676 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 PLS1Q14651 629 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 TTF1Q15361 905 aaPredicted RBP13.53□□□□□ -0.24
CLN3-226ENST00000567160 ZNF365Q70YC5 407 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 C16orf59Q7L2K0 433 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 ACER1Q8TDN7 264 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 FSD1Q9BTV5 496 aa13.53□□□□□ -0.24
CLN3-226ENST00000567160 TLR3O15455 904 aaKnown RBP13.52□□□□□ -0.25
CLN3-226ENST00000567160 GTPBP6O43824 516 aaPredicted RBP13.52□□□□□ -0.25
CLN3-226ENST00000567160 IDH1O75874 414 aaKnown RBP13.52□□□□□ -0.25
CLN3-226ENST00000567160 SDSP20132 328 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 PPP2R2DQ66LE6 453 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 CERS3Q8IU89 383 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 EVI5LQ96CN4 794 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 TINF2Q9BSI4 451 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 EHD4Q9H223 541 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 COG5Q9UP83 839 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 CNPY2Q9Y2B0 182 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 ELP1O95163 1332 aa13.52□□□□□ -0.25
CLN3-226ENST00000567160 ADAMTS4O75173 837 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 SLC25A27O95847 323 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 ACRP10323 421 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 BMP2KLQ5H9B9 411 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 TTC6Q86TZ1 520 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 KBTBD3Q8NAB2 608 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 IL23AQ9NPF7 189 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 DIS3Q9Y2L1 958 aaKnown RBP13.51□□□□□ -0.25
CLN3-226ENST00000567160 CHD7Q9P2D1 2997 aa13.51□□□□□ -0.25
CLN3-226ENST00000567160 LRRC37A2A6NM11 1700 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 SYNRGQ9UMZ2 1314 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 FGBP02675 491 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 USP5P45974 858 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 KCNA10Q16322 511 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 PCSK9Q8NBP7 692 aaKnown RBP13.5□□□□□ -0.25
CLN3-226ENST00000567160 VTI1AQ96AJ9 217 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 SNX27Q96L92 541 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 MMP19Q99542 508 aa13.5□□□□□ -0.25
CLN3-226ENST00000567160 PRRC2BQ5JSZ5 2229 aaKnown RBP13.49□□□□□ -0.25
CLN3-226ENST00000567160 REV3LO60673 3130 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 A0A0U1RQG5 324 aaPredicted RBP13.49□□□□□ -0.25
CLN3-226ENST00000567160 CHGBP05060 677 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 ZNF865P0CJ78 1059 aaPredicted RBP13.49□□□□□ -0.25
CLN3-226ENST00000567160 DSG3P32926 999 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 KCTD2Q14681 263 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 SLFNL1Q499Z3 407 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 ADGRA1Q86SQ6 560 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 KLHDC9Q8NEP7 349 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 PPP1R12CQ9BZL4 782 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLN3-226ENST00000567160 SPC25Q9HBM1 224 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 FAM184BQ9ULE4 1060 aa13.49□□□□□ -0.25
CLN3-226ENST00000567160 YBX2Q9Y2T7 364 aaKnown RBP13.49□□□□□ -0.25
CLN3-226ENST00000567160 FLOT1O75955 427 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 PDE6AP16499 860 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 CDK7P50613 346 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 SLC9C2Q5TAH2 1124 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 MSL3Q8N5Y2 521 aaKnown RBP13.48□□□□□ -0.25
CLN3-226ENST00000567160 MAGEB6Q8N7X4 407 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 LENG1Q96BZ8 264 aaPredicted RBP13.48□□□□□ -0.25
CLN3-226ENST00000567160 PCDHA11Q9Y5I1 949 aa13.48□□□□□ -0.25
CLN3-226ENST00000567160 BAZ2AQ9UIF9 1905 aaKnown RBP13.47□□□□□ -0.25
CLN3-226ENST00000567160 ZNF532Q9HCE3 1301 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 FAM86C2PA6NEL3 165 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 SMIM22K7EJ46 135 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 ARVCFO00192 962 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 RNF113AO15541 343 aaKnown RBP13.47□□□□□ -0.25
CLN3-226ENST00000567160 TLL1O43897 1013 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 DUSP11O75319 330 aaKnown RBP13.47□□□□□ -0.25
CLN3-226ENST00000567160 PGK2P07205 417 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 TAL1P17542 331 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms