RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	PANX2	Q96RD6	677 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	MED15	Q96RN5	788 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	EYA3	Q99504	573 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	BAG1	Q99933	345 aa	Predicted RBP	7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	ZMYND12	Q9H0C1	365 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	C6orf50	Q9HD87	102 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	LRRC4B	Q9NT99	713 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	TRMT1	Q9NXH9	659 aa	Known RBP	7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	SWAP70	Q9UH65	585 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	LIMA1	Q9UHB6	759 aa	Known RBP	7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	PCDHA6	Q9UN73	950 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	PCDHA8	Q9Y5H6	950 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	TAF1	P21675	1872 aa		7.08	□□□□□ -1.28
CLN3-223	ENST00000566472	USP17L3	A6NCW0	530 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	USP17L4	A6NCW7	530 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	AKR1B15	C9JRZ8	316 aa	Predicted RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	KLRF2	D3W0D1	207 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	POLRMT	O00411	1230 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	CYTH3	O43739	400 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	TPM1	P09493	284 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	STAT6	P42226	847 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	AFM	P43652	599 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	PAK1	Q13153	545 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	NONO	Q15233	471 aa	Known RBP eCLIP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	GRIK5	Q16478	980 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	SLC35G1	Q2M3R5	365 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	NOM1	Q5C9Z4	860 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	MFSD14B	Q5SR56	506 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	SOGA3	Q5TF21	947 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	USP17L1	Q7RTZ2	530 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	APTX	Q7Z2E3	356 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	REXO1L1P	Q8IX06	675 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	TRMT44	Q8IYL2	757 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	STAG2	Q8N3U4	1231 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	TC2N	Q8N9U0	490 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	ZNF397	Q8NF99	534 aa	Predicted RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	ZNF592	Q92610	1267 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	CCDC47	Q96A33	483 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	FEZ1	Q99689	392 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	DISC1	Q9NRI5	854 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	SAMSN1	Q9NSI8	373 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	ADD3	Q9UEY8	706 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	SEC63	Q9UGP8	760 aa	Known RBP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	JAG2	Q9Y219	1238 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	MYH6	P13533	1939 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	MYH2	Q9UKX2	1941 aa		7.07	□□□□□ -1.28
CLN3-223	ENST00000566472	IGKV6D-41	A0A0C4DH26	115 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	LRRC10B	A6NIK2	292 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472		H7C1D1	291 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	PPEF1	O14829	653 aa	Predicted RBP	7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	SLC26A4	O43511	780 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	RPN1	P04843	607 aa	Known RBP	7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	OR52Z1	P0C646	297 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	SNHG28	P0DPA3	235 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	CD44	P16070	742 aa	Known RBP	7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	NAPA	P54920	295 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	FKBP1A	P62942	108 aa	Known RBP	7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	GABPA	Q06546	454 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	DDR1	Q08345	913 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	STIM1	Q13586	685 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	IL17A	Q16552	155 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	COBLL1	Q53SF7	1204 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	CCDC93	Q567U6	631 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	RRAGB	Q5VZM2	374 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	TYW1B	Q6NUM6	668 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	HEATR3	Q7Z4Q2	680 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	NEK8	Q86SG6	692 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	PPFIBP1	Q86W92	1011 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	HOMER1	Q86YM7	354 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	CNGA4	Q8IV77	575 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	SLC44A5	Q8NCS7	719 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	UBE2Q2	Q8WVN8	375 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	RIOX1	Q9H6W3	641 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	SAP30BP	Q9UHR5	308 aa	Known RBP	7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	DNAI1	Q9UI46	699 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	STX8	Q9UNK0	236 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	CTNND2	Q9UQB3	1225 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	PPP2R2C	Q9Y2T4	447 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	ATP6V0A2	Q9Y487	856 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	DAGLA	Q9Y4D2	1042 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472	NRXN2	Q9P2S2	1712 aa		7.06	□□□□□ -1.28
CLN3-223	ENST00000566472		A0A1W2PQC6	194 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	PSMA7	O14818	248 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	MFAP3L	O75121	409 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	RHOBTB3	O94955	611 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	CCDC175	P0C221	793 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	NPR1	P16066	1061 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	EEF1G	P26641	437 aa	Known RBP	7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	UBA7	P41226	1012 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	COPB1	P53618	953 aa	Known RBP	7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	AMPD3	Q01432	767 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	TUBB2A	Q13885	445 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	INF2	Q27J81	1249 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	KLHL10	Q6JEL2	608 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	TRIM65	Q6PJ69	517 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	FOXR2	Q6PJQ5	311 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	SYT10	Q6XYQ8	523 aa		7.05	□□□□□ -1.28
CLN3-223	ENST00000566472	ADSSL1	Q8N142	457 aa		7.05	□□□□□ -1.28

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