RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DDX20Q9UHI6 824 aaKnown RBP24.55■■□□□ 1.52
CLN3-219ENST00000565778 TMEM232C9JQI7 657 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 ORC4O43929 436 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 NMT2O60551 498 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 MSCO60682 206 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 PGK2P07205 417 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 MCCP23508 829 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 SNRNP48Q6IEG0 339 aaKnown RBP24.54■■□□□ 1.52
CLN3-219ENST00000565778 CWC27Q6UX04 472 aaKnown RBP24.54■■□□□ 1.52
CLN3-219ENST00000565778 TRPV1Q8NER1 839 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 MAML3Q96JK9 1138 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 DIAPH3Q9NSV4 1193 aa24.54■■□□□ 1.52
CLN3-219ENST00000565778 A0A0G2JMZ2 1700 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 IGHA2P01877 340 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 FGRP09769 529 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 SLC1A4P43007 532 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 HAND2P61296 217 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 IKQ13123 557 aaPredicted RBP24.53■■□□□ 1.52
CLN3-219ENST00000565778 PRAMEF19Q5SWL8 479 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 CHURC1Q8WUH1 139 aa24.53■■□□□ 1.52
CLN3-219ENST00000565778 RAVER2Q9HCJ3 691 aaKnown RBP24.53■■□□□ 1.52
CLN3-219ENST00000565778 HIP1O00291 1037 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 SLC34A2O95436 690 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 DDX11Q96FC9 970 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 GMCL1Q96IK5 515 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 SLC38A10Q9HBR0 1119 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 MTMR7Q9Y216 660 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 RIPK3Q9Y572 518 aa24.52■■□□□ 1.52
CLN3-219ENST00000565778 CYBAP13498 195 aa24.51■■□□□ 1.51
CLN3-219ENST00000565778 STAT2P52630 851 aa24.51■■□□□ 1.51
CLN3-219ENST00000565778 CHRDL2Q6WN34 429 aa24.51■■□□□ 1.51
CLN3-219ENST00000565778 ATP2A1O14983 1001 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 FDX1P10109 184 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 ZNF792Q3KQV3 632 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 RCSD1Q6JBY9 416 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 MFSD6Q6ZSS7 791 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 FAM160B2Q86V87 743 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 STAG1Q8WVM7 1258 aa24.5■■□□□ 1.51
CLN3-219ENST00000565778 DIS3Q9Y2L1 958 aaKnown RBP24.5■■□□□ 1.51
CLN3-219ENST00000565778 MYH4Q9Y623 1939 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 ZNF213O14771 459 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 AKNAD1Q5T1N1 836 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 KCTD1Q719H9 257 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 C7orf61Q8IZ16 206 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 ZMYM6O95789 1325 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 PARP14Q460N5 1801 aa24.49■■□□□ 1.51
CLN3-219ENST00000565778 SEPT4O43236 478 aa24.48■■□□□ 1.51
CLN3-219ENST00000565778 COL11A1P12107 1806 aaPredicted RBP24.48■■□□□ 1.51
CLN3-219ENST00000565778 ANO1Q5XXA6 986 aa24.48■■□□□ 1.51
CLN3-219ENST00000565778 TINF2Q9BSI4 451 aa24.48■■□□□ 1.51
CLN3-219ENST00000565778 PFASO15067 1338 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 COL6A1P12109 1028 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 PDE4AP27815 886 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 OAZ1P54368 228 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 ANKRD35Q8N283 1001 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 ARRDC4Q8NCT1 418 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 SENP6Q9GZR1 1112 aaPredicted RBP24.47■■□□□ 1.51
CLN3-219ENST00000565778 RNF41Q9H4P4 317 aaPredicted RBP24.47■■□□□ 1.51
CLN3-219ENST00000565778 TCP11L1Q9NUJ3 509 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 FBXO40Q9UH90 709 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 ZNF236Q9UL36 1845 aa24.47■■□□□ 1.51
CLN3-219ENST00000565778 MYCNP04198 464 aaPredicted RBP24.46■■□□□ 1.51
CLN3-219ENST00000565778 PCP11498 1178 aaKnown RBP24.46■■□□□ 1.51
CLN3-219ENST00000565778 NOVP48745 357 aa24.46■■□□□ 1.51
CLN3-219ENST00000565778 CHST13Q8NET6 341 aa24.46■■□□□ 1.51
CLN3-219ENST00000565778 PLA2G6O60733 806 aa24.45■■□□□ 1.5
CLN3-219ENST00000565778 TOP1P11387 765 aaKnown RBP24.45■■□□□ 1.5
CLN3-219ENST00000565778 CCDC96Q2M329 555 aa24.45■■□□□ 1.5
CLN3-219ENST00000565778 GJC2Q5T442 439 aaPredicted RBP24.45■■□□□ 1.5
CLN3-219ENST00000565778 TMEM47Q9BQJ4 181 aa24.45■■□□□ 1.5
CLN3-219ENST00000565778 HOMER2Q9NSB8 354 aa24.45■■□□□ 1.5
CLN3-219ENST00000565778 TBC1D10CQ8IV04 446 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 DCAF4Q8WV16 495 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 ESR2Q92731 530 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 AGBL1Q96MI9 1066 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 TTC14Q96N46 770 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 RBM27Q9P2N5 1060 aaKnown RBP24.44■■□□□ 1.5
CLN3-219ENST00000565778 NRBP1Q9UHY1 535 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 PRR12Q9ULL5 1215 aa24.44■■□□□ 1.5
CLN3-219ENST00000565778 ZMYND8Q9ULU4 1186 aaPredicted RBP24.44■■□□□ 1.5
CLN3-219ENST00000565778 ZNFX1Q9P2E3 1918 aaKnown RBP24.43■■□□□ 1.5
CLN3-219ENST00000565778 DNM1LO00429 736 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 SNAP25P60880 206 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 TTC22Q5TAA0 569 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 CCDC174Q6PII3 467 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 DSCC1Q9BVC3 393 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 CTNNA3Q9UI47 895 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 CNPY2Q9Y2B0 182 aa24.43■■□□□ 1.5
CLN3-219ENST00000565778 DNAJC25-GNG10A0A024R161 153 aa24.42■■□□□ 1.5
CLN3-219ENST00000565778 KBTBD13C9JR72 458 aa24.42■■□□□ 1.5
CLN3-219ENST00000565778 TAL1P17542 331 aaPredicted RBP24.42■■□□□ 1.5
CLN3-219ENST00000565778 LRRC26Q2I0M4 334 aa24.42■■□□□ 1.5
CLN3-219ENST00000565778 RASGRP2Q7LDG7 609 aa24.42■■□□□ 1.5
CLN3-219ENST00000565778 ALAS1P13196 640 aa24.41■■□□□ 1.5
CLN3-219ENST00000565778 GSPT1P15170 499 aaKnown RBP24.41■■□□□ 1.5
CLN3-219ENST00000565778 SYN1P17600 705 aa24.41■■□□□ 1.5
CLN3-219ENST00000565778 IMMTQ16891 758 aaKnown RBP24.41■■□□□ 1.5
CLN3-219ENST00000565778 TTBK2Q6IQ55 1244 aa24.41■■□□□ 1.5
CLN3-219ENST00000565778 MSL3Q8N5Y2 521 aaKnown RBP24.41■■□□□ 1.5
CLN3-219ENST00000565778 TRERF1Q96PN7 1200 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms