RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FSD1Q9BTV5 496 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 FEM1BQ9UK73 627 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 PHF24Q9UPV7 400 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 ATP11BQ9Y2G3 1177 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 RIPK3Q9Y572 518 aa20.4■□□□□ 0.86
CLN3-216ENST00000565316 LAMA2P24043 3122 aaKnown RBP20.39■□□□□ 0.85
CLN3-216ENST00000565316 DNAJC25-GNG10A0A024R161 153 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 ZBED4O75132 1171 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 RARBP10826 455 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 PDE4BQ07343 736 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 SLC38A10Q9HBR0 1119 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 XPNPEP3Q9NQH7 507 aa20.39■□□□□ 0.85
CLN3-216ENST00000565316 RRP1P56182 461 aaKnown RBP20.38■□□□□ 0.85
CLN3-216ENST00000565316 PPARAQ07869 468 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 MAMDC4Q6UXC1 1216 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 DEFB123Q8N688 67 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 NAPBQ9H115 298 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 PRKAG2Q9UGJ0 569 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 SYNGAP1Q96PV0 1343 aa20.38■□□□□ 0.85
CLN3-216ENST00000565316 FOXP2O15409 715 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 SLC3A2P08195 630 aaKnown RBP20.37■□□□□ 0.85
CLN3-216ENST00000565316 OAZ1P54368 228 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 TRIM60Q495X7 471 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 LRRC47Q8N1G4 583 aaKnown RBP20.37■□□□□ 0.85
CLN3-216ENST00000565316 FERMT2Q96AC1 680 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 KIFC2Q96AC6 838 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 CNPY2Q9Y2B0 182 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 SMCHD1A6NHR9 2005 aa20.37■□□□□ 0.85
CLN3-216ENST00000565316 A0A0C4DFX4 3053 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 PLXNA1Q9UIW2 1896 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 SNAI1O95863 264 aaPredicted RBP20.36■□□□□ 0.85
CLN3-216ENST00000565316 MYCNP04198 464 aaPredicted RBP20.36■□□□□ 0.85
CLN3-216ENST00000565316 TSPY3P0CV98 308 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 TSPY8P0CW00 308 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 AKR1A1P14550 325 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 TFAP4Q01664 338 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 SLFN13Q68D06 897 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 Q7L0L9 218 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 ZNF467Q7Z7K2 595 aaPredicted RBP20.36■□□□□ 0.85
CLN3-216ENST00000565316 RNF180Q86T96 592 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 DDX11Q96FC9 970 aa20.36■□□□□ 0.85
CLN3-216ENST00000565316 RAVER2Q9HCJ3 691 aaKnown RBP20.36■□□□□ 0.85
CLN3-216ENST00000565316 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-216ENST00000565316 PGK1P00558 417 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 FDX1P10109 184 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 BMP3P12645 472 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 CPXCR1Q8N123 301 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 CHST13Q8NET6 341 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 GMCL1Q96IK5 515 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 PDLIM7Q9NR12 457 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 MTMR10Q9NXD2 777 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 FBXO40Q9UH90 709 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 MYH4Q9Y623 1939 aa20.35■□□□□ 0.85
CLN3-216ENST00000565316 LTBP2Q14767 1821 aa20.34■□□□□ 0.85
CLN3-216ENST00000565316 ADAMTS4O75173 837 aa20.34■□□□□ 0.85
CLN3-216ENST00000565316 PPP4R3BQ5MIZ7 849 aa20.34■□□□□ 0.85
CLN3-216ENST00000565316 TSEN34Q9BSV6 310 aaKnown RBP20.34■□□□□ 0.85
CLN3-216ENST00000565316 CTDP1Q9Y5B0 961 aaPredicted RBP20.34■□□□□ 0.85
CLN3-216ENST00000565316 TRIM43BA6NCK2 446 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 POTEB2H3BUK9 544 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 TLE2Q04725 743 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 HDAC1Q13547 482 aaPredicted RBP20.33■□□□□ 0.85
CLN3-216ENST00000565316 ANKRD45Q5TZF3 282 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 FAM109BQ6ICB4 259 aaPredicted RBP20.33■□□□□ 0.85
CLN3-216ENST00000565316 CCDC129Q6ZRS4 1044 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 TRIM43Q96BQ3 446 aaPredicted RBP20.33■□□□□ 0.85
CLN3-216ENST00000565316 LENG1Q96BZ8 264 aaPredicted RBP20.33■□□□□ 0.85
CLN3-216ENST00000565316 FGD4Q96M96 766 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 ANAPC4Q9UJX5 808 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 FAM184BQ9ULE4 1060 aa20.33■□□□□ 0.85
CLN3-216ENST00000565316 A0A1W2PQ45 241 aaPredicted RBP20.32■□□□□ 0.84
CLN3-216ENST00000565316 A0A1W2PQY0 241 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 TMEM232C9JQI7 657 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 PLA2G6O60733 806 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 ALX1Q15699 326 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 SH3RF1Q7Z6J0 888 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 TICAM2Q86XR7 235 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 ANKRD35Q8N283 1001 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 KLHDC9Q8NEP7 349 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 EVI5LQ96CN4 794 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 CRBNQ96SW2 442 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 PRDM5Q9NQX1 630 aaPredicted RBP20.32■□□□□ 0.84
CLN3-216ENST00000565316 IL17RBQ9NRM6 502 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 STXBP5LQ9Y2K9 1186 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 SYNRGQ9UMZ2 1314 aa20.32■□□□□ 0.84
CLN3-216ENST00000565316 FGRP09769 529 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 NOVP48745 357 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 SLC4A3P48751 1232 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 STAT2P52630 851 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 PDE1AP54750 535 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 CCSAPQ6IQ19 270 aaPredicted RBP20.31■□□□□ 0.84
CLN3-216ENST00000565316 FAM160B2Q86V87 743 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 CHURC1Q8WUH1 139 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 STAG1Q8WVM7 1258 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 BADQ92934 168 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 INCENPQ9NQS7 918 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 TACC3Q9Y6A5 838 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 ZNF536O15090 1300 aa20.31■□□□□ 0.84
CLN3-216ENST00000565316 DUSP11O75319 330 aaKnown RBP20.3■□□□□ 0.84
CLN3-216ENST00000565316 SLC1A4P43007 532 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms