RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CCDC171Q6TFL3 1326 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 TRIM6-TRIM34B2RNG4 842 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 RAD21O60216 631 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 SLFN13Q68D06 897 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 TEX13BQ9BXU2 312 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 C11orf49Q9H6J7 331 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 FRMPD3Q5JV73 1810 aa17.65■□□□□ 0.42
CLN3-213ENST00000565047 DNAJC25-GNG10A0A024R161 153 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 PGK2P07205 417 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 BMP3P12645 472 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 MMP19Q99542 508 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 DIS3Q9Y2L1 958 aaKnown RBP17.64■□□□□ 0.41
CLN3-213ENST00000565047 NR2E3Q9Y5X4 410 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 ZNFX1Q9P2E3 1918 aaKnown RBP17.64■□□□□ 0.41
CLN3-213ENST00000565047 SZT2Q5T011 3432 aa17.64■□□□□ 0.41
CLN3-213ENST00000565047 TSPY2A6NKD2 308 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 EVI5O60447 810 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 PLA2G6O60733 806 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 COPB2P35606 906 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 PRAMEF19Q5SWL8 479 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 KIFC2Q96AC6 838 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 TCP11L1Q9NUJ3 509 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 ZNF536O15090 1300 aa17.63■□□□□ 0.41
CLN3-213ENST00000565047 DNAH12Q6ZR08 3092 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 SEPT4O43236 478 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 MSCO60682 206 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 OAZ1P54368 228 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 SNRNP48Q6IEG0 339 aaKnown RBP17.62■□□□□ 0.41
CLN3-213ENST00000565047 CHRDL2Q6WN34 429 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 RASGRP2Q7LDG7 609 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 RAVER2Q9HCJ3 691 aaKnown RBP17.62■□□□□ 0.41
CLN3-213ENST00000565047 SLC5A4Q9NY91 659 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 RBM27Q9P2N5 1060 aaKnown RBP17.62■□□□□ 0.41
CLN3-213ENST00000565047 LAMA3Q16787 3333 aa17.62■□□□□ 0.41
CLN3-213ENST00000565047 TMEM232C9JQI7 657 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 ZBED4O75132 1171 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 GSPT1P15170 499 aaKnown RBP17.61■□□□□ 0.41
CLN3-213ENST00000565047 MCCP23508 829 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 FXR1P51114 621 aaKnown RBP eCLIP17.61■□□□□ 0.41
CLN3-213ENST00000565047 KCTD2Q14681 263 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 PPP4R3BQ5MIZ7 849 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 RCSD1Q6JBY9 416 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 TBC1D10CQ8IV04 446 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 STAG1Q8WVM7 1258 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 FGD4Q96M96 766 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 TINF2Q9BSI4 451 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 IL25Q9H293 177 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 NRBP1Q9UHY1 535 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 STX8Q9UNK0 236 aa17.61■□□□□ 0.41
CLN3-213ENST00000565047 RANBP6O60518 1105 aaKnown RBP17.6■□□□□ 0.41
CLN3-213ENST00000565047 ZNF865P0CJ78 1059 aaPredicted RBP17.6■□□□□ 0.41
CLN3-213ENST00000565047 SLC1A4P43007 532 aa17.6■□□□□ 0.41
CLN3-213ENST00000565047 HAND2P61296 217 aa17.6■□□□□ 0.41
CLN3-213ENST00000565047 IRX6P78412 446 aaPredicted RBP17.6■□□□□ 0.41
CLN3-213ENST00000565047 CWC27Q6UX04 472 aaKnown RBP17.6■□□□□ 0.41
CLN3-213ENST00000565047 MAMDC4Q6UXC1 1216 aa17.6■□□□□ 0.41
CLN3-213ENST00000565047 CPXCR1Q8N123 301 aa17.6■□□□□ 0.41
CLN3-213ENST00000565047 DNM1LO00429 736 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 FDX1P10109 184 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 PCP11498 1178 aaKnown RBP17.59■□□□□ 0.41
CLN3-213ENST00000565047 TAL1P17542 331 aaPredicted RBP17.59■□□□□ 0.41
CLN3-213ENST00000565047 CNGA1P29973 690 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 STAT2P52630 851 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 LRRC26Q2I0M4 334 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 AKNAD1Q5T1N1 836 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 FAM160B2Q86V87 743 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 TMEM47Q9BQJ4 181 aa17.59■□□□□ 0.41
CLN3-213ENST00000565047 SNAI1O95863 264 aaPredicted RBP17.58■□□□□ 0.4
CLN3-213ENST00000565047 MFAP1P55081 439 aaKnown RBP17.58■□□□□ 0.4
CLN3-213ENST00000565047 BTNL9Q6UXG8 535 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 KCTD1Q719H9 257 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 C7orf61Q8IZ16 206 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 MSL3Q8N5Y2 521 aaKnown RBP17.58■□□□□ 0.4
CLN3-213ENST00000565047 CHST13Q8NET6 341 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 CHURC1Q8WUH1 139 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 GDF15Q99988 308 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 PRR12Q9ULL5 1215 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 PLXNA1Q9UIW2 1896 aa17.58■□□□□ 0.4
CLN3-213ENST00000565047 NEDD4P46934 1319 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 HIP1O00291 1037 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 TOP1P11387 765 aaKnown RBP17.57■□□□□ 0.4
CLN3-213ENST00000565047 TTC22Q5TAA0 569 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 ANO1Q5XXA6 986 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 ZNF467Q7Z7K2 595 aaPredicted RBP17.57■□□□□ 0.4
CLN3-213ENST00000565047 DCAF4Q8WV16 495 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 AGBL1Q96MI9 1066 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 DSCC1Q9BVC3 393 aa17.57■□□□□ 0.4
CLN3-213ENST00000565047 SYNGAP1Q96PV0 1343 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 SNHG28P0DPA3 235 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 RRP12Q5JTH9 1297 aaKnown RBP17.56■□□□□ 0.4
CLN3-213ENST00000565047 GJC2Q5T442 439 aaPredicted RBP17.56■□□□□ 0.4
CLN3-213ENST00000565047 TTBK2Q6IQ55 1244 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 MFSD6Q6ZSS7 791 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 CHMP4CQ96CF2 233 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 TTC14Q96N46 770 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 DIAPH3Q9NSV4 1193 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 FBXO40Q9UH90 709 aa17.56■□□□□ 0.4
CLN3-213ENST00000565047 ZNF213O14771 459 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 PDHBP11177 359 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 BMP8BP34820 402 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms