RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 DDX11Q96FC9 970 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 ANTXR1Q9H6X2 564 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 VCPKMTQ9H867 229 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 SPC25Q9HBM1 224 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 IL23AQ9NPF7 189 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 TLR7Q9NYK1 1049 aaKnown RBP8.87□□□□□ -0.99
VPS4A-203ENST00000564399 TMX2Q9Y320 296 aa8.87□□□□□ -0.99
VPS4A-203ENST00000564399 BAZ2AQ9UIF9 1905 aaKnown RBP8.87□□□□□ -0.99
VPS4A-203ENST00000564399 MYADML2A6NDP7 307 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 ARVCFO00192 962 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 DUSP11O75319 330 aaKnown RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 BCAR3O75815 825 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 ASGR1P07306 291 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 CYP2D6P10635 497 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 COPB2P35606 906 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 SLC4A3P48751 1232 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 CDK7P50613 346 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 IRX5P78411 483 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 CACNB1Q02641 598 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 GNASQ5JWF2 1037 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 CCSAPQ6IQ19 270 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 TMED8Q6PL24 325 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 HERVK_113Q902F9 699 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 FRAT1Q92837 279 aaPredicted RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 CLUAP1Q96AJ1 413 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 DYNLL2Q96FJ2 89 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 RIOK1Q9BRS2 568 aaKnown RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 FBXO28Q9NVF7 368 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 SWAP70Q9UH65 585 aa8.86□□□□□ -0.99
VPS4A-203ENST00000564399 YBX2Q9Y2T7 364 aaKnown RBP8.86□□□□□ -0.99
VPS4A-203ENST00000564399 SYNGAP1Q96PV0 1343 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 CHD9Q3L8U1 2897 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 VWA5AO00534 786 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 SNAI1O95863 264 aaPredicted RBP8.85□□□□□ -0.99
VPS4A-203ENST00000564399 AKR1B1P15121 316 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 CST5P28325 142 aaPredicted RBP8.85□□□□□ -0.99
VPS4A-203ENST00000564399 KCNQ1P51787 676 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 RABGGTBP53611 331 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 ATP8B2P98198 1209 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 POLA2Q14181 598 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 SLC9C2Q5TAH2 1124 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 PPP2R2DQ66LE6 453 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 OTOP2Q7RTS6 562 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 SIAH1Q8IUQ4 282 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 FAM126BQ8IXS8 530 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 TRMT2AQ8IZ69 625 aaKnown RBP8.85□□□□□ -0.99
VPS4A-203ENST00000564399 MSL3Q8N5Y2 521 aaKnown RBP8.85□□□□□ -0.99
VPS4A-203ENST00000564399 SSH3Q8TE77 659 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 SDR42E1Q8WUS8 393 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 EAF2Q96CJ1 260 aaPredicted RBP8.85□□□□□ -0.99
VPS4A-203ENST00000564399 LRFN3Q9BTN0 628 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 RNF39Q9H2S5 420 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 EPHX3Q9H6B9 360 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 PPP1R9AQ9ULJ8 1098 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 ADAMTS5Q9UNA0 930 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 TNNQ9UQP3 1299 aa8.85□□□□□ -0.99
VPS4A-203ENST00000564399 ZBBXA8MT70 800 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 GTPBP6O43824 516 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 EEF2P13639 858 aaKnown RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 TRIM27P14373 513 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 PDE6AP16499 860 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 CCL23P55773 120 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 ACVR2BQ13705 512 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 TTF1Q15361 905 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 CCDC144BQ3MJ40 725 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 TMEM31Q5JXX7 168 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 FAM83BQ5T0W9 1011 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 SNRNP48Q6IEG0 339 aaKnown RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 NOL8Q76FK4 1167 aaKnown RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 CCDC17Q96LX7 622 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 HIPK3Q9H422 1215 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 GOPCQ9HD26 462 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 DCP1AQ9NPI6 582 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 ZNF214Q9UL59 606 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 ARIH1Q9Y4X5 557 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 CTDP1Q9Y5B0 961 aaPredicted RBP8.84□□□□□ -0.99
VPS4A-203ENST00000564399 SLC4A7Q9Y6M7 1214 aa8.84□□□□□ -0.99
VPS4A-203ENST00000564399 ERC2O15083 957 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 MYOGP15173 224 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 GJA9P57773 515 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 BEX3Q00994 111 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 MAMDC4Q6UXC1 1216 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 AACSQ86V21 672 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 AMOTL1Q8IY63 956 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 RPUSD2Q8IZ73 545 aaKnown RBP8.83□□□□□ -1
VPS4A-203ENST00000564399 CPXCR1Q8N123 301 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 LCORLQ8N3X6 602 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 TEX13BQ9BXU2 312 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 UPF3AQ9H1J1 476 aaKnown RBP8.83□□□□□ -1
VPS4A-203ENST00000564399 ABHD16BQ9H3Z7 469 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 C1orf115Q9H7X2 142 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 KANSL2Q9H9L4 492 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 NOP58Q9Y2X3 529 aaKnown RBP8.83□□□□□ -1
VPS4A-203ENST00000564399 PCDHA11Q9Y5I1 949 aa8.83□□□□□ -1
VPS4A-203ENST00000564399 CHD7Q9P2D1 2997 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 UMODL1Q5DID0 1318 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ZNF532Q9HCE3 1301 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 RFXAPO00287 272 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ADCY6O43306 1168 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms