RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RTP1P59025 263 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 KLRC3Q07444 240 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 LRIT3Q3SXY7 679 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 FAM47AQ5JRC9 791 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 Q7L0L9 218 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 PI4K2BQ8TCG2 481 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 NYAP2Q9P242 653 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 DNAH12Q6ZR08 3092 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 IGKV6D-41A0A0C4DH26 115 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 POTEMA6NI47 508 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 ZFYP08048 801 aaPredicted RBP13.9□□□□□ -0.18
USP3-220ENST00000561381 TAL1P17542 331 aaPredicted RBP13.9□□□□□ -0.18
USP3-220ENST00000561381 VASPP50552 380 aaPredicted RBP13.9□□□□□ -0.18
USP3-220ENST00000561381 LRRC41Q15345 812 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 ZNF792Q3KQV3 632 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 ARRDC4Q8NCT1 418 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 SLF1Q9BQI6 1058 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 CLIP2Q9UDT6 1046 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 ATP11BQ9Y2G3 1177 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 RIPK3Q9Y572 518 aa13.9□□□□□ -0.18
USP3-220ENST00000561381 PATL2C9JE40 543 aaKnown RBP13.89□□□□□ -0.19
USP3-220ENST00000561381 KBTBD13C9JR72 458 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 GNAT2P19087 354 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 ADCYAP1R1P41586 468 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 KCTD2Q14681 263 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 SLC39A5Q6ZMH5 540 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 IFNL3Q8IZI9 196 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 LRRC47Q8N1G4 583 aaKnown RBP13.89□□□□□ -0.19
USP3-220ENST00000561381 FERMT2Q96AC1 680 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 CEP95Q96GE4 821 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 PCDHB13Q9Y5F0 798 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 PLXNA1Q9UIW2 1896 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 TTC41PQ6P2S7 1318 aa13.89□□□□□ -0.19
USP3-220ENST00000561381 MYH4Q9Y623 1939 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 SLC4A3P48751 1232 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 TRIM60Q495X7 471 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 SNRNP48Q6IEG0 339 aaKnown RBP13.88□□□□□ -0.19
USP3-220ENST00000561381 ZNF444Q8N0Y2 327 aaPredicted RBP13.88□□□□□ -0.19
USP3-220ENST00000561381 CPXCR1Q8N123 301 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 DEFB123Q8N688 67 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 LENG1Q96BZ8 264 aaPredicted RBP13.88□□□□□ -0.19
USP3-220ENST00000561381 TINF2Q9BSI4 451 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 FSD1Q9BTV5 496 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 TEX13BQ9BXU2 312 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 MTMR4Q9NYA4 1195 aa13.88□□□□□ -0.19
USP3-220ENST00000561381 ERC2O15083 957 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 PGK1P00558 417 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 ZNF865P0CJ78 1059 aaPredicted RBP13.87□□□□□ -0.19
USP3-220ENST00000561381 ZMYM1Q5SVZ6 1142 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 GPR153Q6NV75 609 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 POTEGQ6S5H5 508 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 CCDC129Q6ZRS4 1044 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 PRPF38AQ8NAV1 312 aaKnown RBP13.87□□□□□ -0.19
USP3-220ENST00000561381 MKL1Q969V6 931 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 KIFC2Q96AC6 838 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 LBHD1Q9BQE6 289 aaPredicted RBP13.87□□□□□ -0.19
USP3-220ENST00000561381 RAVER2Q9HCJ3 691 aaKnown RBP13.87□□□□□ -0.19
USP3-220ENST00000561381 XPNPEP3Q9NQH7 507 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
USP3-220ENST00000561381 DIS3Q9Y2L1 958 aaKnown RBP13.87□□□□□ -0.19
USP3-220ENST00000561381 COL6A3P12111 3177 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 LTBP2Q14767 1821 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 FOXP2O15409 715 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 TTLL1O95922 423 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 RARBP10826 455 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 MX1P20591 662 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 COPB2P35606 906 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 SNX17Q15036 470 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 SH3RF1Q7Z6J0 888 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 NEDD1Q8NHV4 660 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 CHMP4CQ96CF2 233 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 NAPBQ9H115 298 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 INCENPQ9NQS7 918 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 PRDM5Q9NQX1 630 aaPredicted RBP13.86□□□□□ -0.19
USP3-220ENST00000561381 PRKAG2Q9UGJ0 569 aa13.86□□□□□ -0.19
USP3-220ENST00000561381 DNAJC25-GNG10A0A024R161 153 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 TRIM43BA6NCK2 446 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 SNAI1O95863 264 aaPredicted RBP13.85□□□□□ -0.19
USP3-220ENST00000561381 TSPY3P0CV98 308 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 TSPY8P0CW00 308 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 RRP1P56182 461 aaKnown RBP13.85□□□□□ -0.19
USP3-220ENST00000561381 TFAP4Q01664 338 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 PPARAQ07869 468 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 LRRFIP1Q32MZ4 808 aaKnown RBP13.85□□□□□ -0.19
USP3-220ENST00000561381 SLFN13Q68D06 897 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 GMCL1P1Q8NEA9 526 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 TRIM43Q96BQ3 446 aaPredicted RBP13.85□□□□□ -0.19
USP3-220ENST00000561381 DDX11Q96FC9 970 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 CRBNQ96SW2 442 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 NACAP1Q9BZK3 213 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 SLC38A10Q9HBR0 1119 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 ZNF287Q9HBT7 754 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 PDLIM7Q9NR12 457 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 MTMR10Q9NXD2 777 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 FEM1BQ9UK73 627 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 PHF24Q9UPV7 400 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 SALL3Q9BXA9 1300 aa13.85□□□□□ -0.19
USP3-220ENST00000561381 PLIN4Q96Q06 1357 aa13.84□□□□□ -0.19
USP3-220ENST00000561381 ATP2A1O14983 1001 aa13.84□□□□□ -0.19
USP3-220ENST00000561381 ZBED4O75132 1171 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms