RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 NR2E3Q9Y5X4 410 aa18.96■□□□□ 0.63
LMX1B-204ENST00000561065 SMCHD1A6NHR9 2005 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 TRIM6-TRIM34B2RNG4 842 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 SLC3A2P08195 630 aaKnown RBP18.95■□□□□ 0.62
LMX1B-204ENST00000561065 ALX1Q15699 326 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 MCMDC2Q4G0Z9 681 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 C7orf61Q8IZ16 206 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 TEX13BQ9BXU2 312 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 ZMYM6O95789 1325 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 CCDC171Q6TFL3 1326 aa18.95■□□□□ 0.62
LMX1B-204ENST00000561065 LCTP09848 1927 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 FGAP02671 866 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 FGRP09769 529 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 HSPD1P10809 573 aaKnown RBP18.94■□□□□ 0.62
LMX1B-204ENST00000561065 CNGA1P29973 690 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 PRAMEF19Q5SWL8 479 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 ANO1Q5XXA6 986 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 SLFN13Q68D06 897 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 SNRNP48Q6IEG0 339 aaKnown RBP18.94■□□□□ 0.62
LMX1B-204ENST00000561065 RILPL2Q969X0 211 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 KIFC2Q96AC6 838 aa18.94■□□□□ 0.62
LMX1B-204ENST00000561065 LRRC37A2A6NM11 1700 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 TSPY2A6NKD2 308 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 ORC4O43929 436 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 NOVP48745 357 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 ZNF792Q3KQV3 632 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 PRPF38AQ8NAV1 312 aaKnown RBP18.93■□□□□ 0.62
LMX1B-204ENST00000561065 CHMP4CQ96CF2 233 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 SLC38A10Q9HBR0 1119 aa18.93■□□□□ 0.62
LMX1B-204ENST00000561065 ATP2A1O14983 1001 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 MSCO60682 206 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 BMP3P12645 472 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 SDSP20132 328 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 LRRC26Q2I0M4 334 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 CPXCR1Q8N123 301 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 RAVER2Q9HCJ3 691 aaKnown RBP18.92■□□□□ 0.62
LMX1B-204ENST00000561065 FEM1BQ9UK73 627 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 ZMYND8Q9ULU4 1186 aaPredicted RBP18.92■□□□□ 0.62
LMX1B-204ENST00000561065 STX8Q9UNK0 236 aa18.92■□□□□ 0.62
LMX1B-204ENST00000561065 LTBP2Q14767 1821 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 SEPT4O43236 478 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 PDE4AP27815 886 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 COPB2P35606 906 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 HAND2P61296 217 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 IRX6P78412 446 aaPredicted RBP18.91■□□□□ 0.62
LMX1B-204ENST00000561065 KCTD2Q14681 263 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 TBC1D10CQ8IV04 446 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 GMCL1Q96IK5 515 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 FGD4Q96M96 766 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 SLC5A4Q9NY91 659 aa18.91■□□□□ 0.62
LMX1B-204ENST00000561065 DNAJC25-GNG10A0A024R161 153 aa18.9■□□□□ 0.62
LMX1B-204ENST00000561065 TMEM232C9JQI7 657 aa18.9■□□□□ 0.62
LMX1B-204ENST00000561065 RANBP6O60518 1105 aaKnown RBP18.9■□□□□ 0.62
LMX1B-204ENST00000561065 TAL1P17542 331 aaPredicted RBP18.9■□□□□ 0.62
LMX1B-204ENST00000561065 SYN1P17600 705 aa18.9■□□□□ 0.62
LMX1B-204ENST00000561065 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.9■□□□□ 0.62
LMX1B-204ENST00000561065 ZNF536O15090 1300 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 DNM1LO00429 736 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 MCCP23508 829 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 STAT2P52630 851 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 MFAP1P55081 439 aaKnown RBP18.89■□□□□ 0.61
LMX1B-204ENST00000561065 GJC2Q5T442 439 aaPredicted RBP18.89■□□□□ 0.61
LMX1B-204ENST00000561065 KCTD1Q719H9 257 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 TINF2Q9BSI4 451 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 IL25Q9H293 177 aa18.89■□□□□ 0.61
LMX1B-204ENST00000561065 DIS3Q9Y2L1 958 aaKnown RBP18.89■□□□□ 0.61
LMX1B-204ENST00000561065 NEDD4P46934 1319 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 HIP1O00291 1037 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 ZBED4O75132 1171 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 SLC1A4P43007 532 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 SLC4A3P48751 1232 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 RRP12Q5JTH9 1297 aaKnown RBP18.88■□□□□ 0.61
LMX1B-204ENST00000561065 LENG1Q96BZ8 264 aaPredicted RBP18.88■□□□□ 0.61
LMX1B-204ENST00000561065 GDF15Q99988 308 aa18.88■□□□□ 0.61
LMX1B-204ENST00000561065 ISY1Q9ULR0 285 aaKnown RBP18.88■□□□□ 0.61
LMX1B-204ENST00000561065 ZNF865P0CJ78 1059 aaPredicted RBP18.87■□□□□ 0.61
LMX1B-204ENST00000561065 GSPT1P15170 499 aaKnown RBP18.87■□□□□ 0.61
LMX1B-204ENST00000561065 OAZ1P54368 228 aa18.87■□□□□ 0.61
LMX1B-204ENST00000561065 SNAP25P60880 206 aa18.87■□□□□ 0.61
LMX1B-204ENST00000561065 CWC27Q6UX04 472 aaKnown RBP18.87■□□□□ 0.61
LMX1B-204ENST00000561065 STAG1Q8WVM7 1258 aa18.87■□□□□ 0.61
LMX1B-204ENST00000561065 SENP6Q9GZR1 1112 aaPredicted RBP18.87■□□□□ 0.61
LMX1B-204ENST00000561065 TOMM22Q9NS69 142 aa18.87■□□□□ 0.61
LMX1B-204ENST00000561065 MTMR7Q9Y216 660 aa18.87■□□□□ 0.61
LMX1B-204ENST00000561065 RCSD1Q6JBY9 416 aa18.86■□□□□ 0.61
LMX1B-204ENST00000561065 FAM160B2Q86V87 743 aa18.86■□□□□ 0.61
LMX1B-204ENST00000561065 AGBL1Q96MI9 1066 aa18.86■□□□□ 0.61
LMX1B-204ENST00000561065 HOMER2Q9NSB8 354 aa18.86■□□□□ 0.61
LMX1B-204ENST00000561065 NRBP1Q9UHY1 535 aa18.86■□□□□ 0.61
LMX1B-204ENST00000561065 PLA2G6O60733 806 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 SNAI1O95863 264 aaPredicted RBP18.85■□□□□ 0.61
LMX1B-204ENST00000561065 MAGEA10P43363 369 aaPredicted RBP18.85■□□□□ 0.61
LMX1B-204ENST00000561065 ATN1P54259 1190 aaPredicted RBP18.85■□□□□ 0.61
LMX1B-204ENST00000561065 LRRC41Q15345 812 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 PPP4R3BQ5MIZ7 849 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 AKNAD1Q5T1N1 836 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 TMEM47Q9BQJ4 181 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 DIAPH3Q9NSV4 1193 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 PRR12Q9ULL5 1215 aa18.85■□□□□ 0.61
LMX1B-204ENST00000561065 SYNGAP1Q96PV0 1343 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms