RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 ORC4O43929 436 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 COL6A1P12109 1028 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 STAT2P52630 851 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 IKQ13123 557 aaPredicted RBP16.67■□□□□ 0.26
TPM1-223ENST00000560445 SLFN13Q68D06 897 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 CHD1LQ86WJ1 897 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 RNF41Q9H4P4 317 aaPredicted RBP16.67■□□□□ 0.26
TPM1-223ENST00000560445 STX8Q9UNK0 236 aa16.67■□□□□ 0.26
TPM1-223ENST00000560445 RANBP6O60518 1105 aaKnown RBP16.66■□□□□ 0.26
TPM1-223ENST00000560445 COBLO75128 1261 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 IGHA2P01877 340 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 RARBP10826 455 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 SLC1A4P43007 532 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 LRRC47Q8N1G4 583 aaKnown RBP16.66■□□□□ 0.26
TPM1-223ENST00000560445 CHST13Q8NET6 341 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 KIFC2Q96AC6 838 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 TINF2Q9BSI4 451 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 PRKAG2Q9UGJ0 569 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 PNMA2Q9UL42 364 aa16.66■□□□□ 0.26
TPM1-223ENST00000560445 PLA2G6O60733 806 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 MNX1P50219 401 aaPredicted RBP16.65■□□□□ 0.26
TPM1-223ENST00000560445 FXR1P51114 621 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM1-223ENST00000560445 NUCB1Q02818 461 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 TKFCQ3LXA3 575 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM1-223ENST00000560445 ZNF467Q7Z7K2 595 aaPredicted RBP16.65■□□□□ 0.26
TPM1-223ENST00000560445 REPS2Q8NFH8 660 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 RILPL2Q969X0 211 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 NUP88Q99567 741 aaPredicted RBP16.65■□□□□ 0.26
TPM1-223ENST00000560445 OSBPL3Q9H4L5 887 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 SLC38A10Q9HBR0 1119 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 TOMM22Q9NS69 142 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 DIAPH3Q9NSV4 1193 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM1-223ENST00000560445 CCDC171Q6TFL3 1326 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 SYNGAP1Q96PV0 1343 aa16.65■□□□□ 0.26
TPM1-223ENST00000560445 ZNFX1Q9P2E3 1918 aaKnown RBP16.64■□□□□ 0.26
TPM1-223ENST00000560445 BMP8BP34820 402 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 ZNF792Q3KQV3 632 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 FAM47AQ5JRC9 791 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 RCSD1Q6JBY9 416 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 ANKRD35Q8N283 1001 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 STAG1Q8WVM7 1258 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 RBM27Q9P2N5 1060 aaKnown RBP16.64■□□□□ 0.25
TPM1-223ENST00000560445 PLXNA1Q9UIW2 1896 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 ALPK3Q96L96 1907 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 PFASO15067 1338 aa16.64■□□□□ 0.25
TPM1-223ENST00000560445 AKR1A1P14550 325 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 CCDC178Q5BJE1 867 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 B4GALNT3Q6L9W6 998 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 CCDC129Q6ZRS4 1044 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 RNF180Q86T96 592 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 CPXCR1Q8N123 301 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 DCAF4Q8WV16 495 aa16.63■□□□□ 0.25
TPM1-223ENST00000560445 SENP6Q9GZR1 1112 aaPredicted RBP16.63■□□□□ 0.25
TPM1-223ENST00000560445 TMEM232C9JQI7 657 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 FGRP09769 529 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 CTDSPL2Q05D32 466 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 LBHD1Q9BQE6 289 aaPredicted RBP16.62■□□□□ 0.25
TPM1-223ENST00000560445 PRO3102Q9H379 93 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 ACAD9Q9H845 621 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 XPNPEP3Q9NQH7 507 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 TCP11L1Q9NUJ3 509 aa16.62■□□□□ 0.25
TPM1-223ENST00000560445 A0A0D9SFI3 127 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 FGAP02671 866 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 PGK2P07205 417 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 HSPD1P10809 573 aaKnown RBP16.61■□□□□ 0.25
TPM1-223ENST00000560445 TOP1P11387 765 aaKnown RBP16.61■□□□□ 0.25
TPM1-223ENST00000560445 SLC4A3P48751 1232 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 NMIQ13287 307 aaPredicted RBP16.61■□□□□ 0.25
TPM1-223ENST00000560445 MAMDC4Q6UXC1 1216 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 MFSD6Q6ZSS7 791 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 TRPV1Q8NER1 839 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 ESR2Q92731 530 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 FAM227BQ96M60 508 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 TTC14Q96N46 770 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 SPC25Q9HBM1 224 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 RAVER2Q9HCJ3 691 aaKnown RBP16.61■□□□□ 0.25
TPM1-223ENST00000560445 CTNNA3Q9UI47 895 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 FAM184BQ9ULE4 1060 aa16.61■□□□□ 0.25
TPM1-223ENST00000560445 ZMYND8Q9ULU4 1186 aaPredicted RBP16.61■□□□□ 0.25
TPM1-223ENST00000560445 MYCNP04198 464 aaPredicted RBP16.6■□□□□ 0.25
TPM1-223ENST00000560445 SDSP20132 328 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 MCCP23508 829 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 CCDC96Q2M329 555 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 RRP12Q5JTH9 1297 aaKnown RBP16.6■□□□□ 0.25
TPM1-223ENST00000560445 VPS53Q5VIR6 699 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 PLEKHM2Q8IWE5 1019 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 EXOC6Q8TAG9 804 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 GDF15Q99988 308 aa16.6■□□□□ 0.25
TPM1-223ENST00000560445 SUPT16HQ9Y5B9 1047 aaKnown RBP16.6■□□□□ 0.25
TPM1-223ENST00000560445 DNAJC25-GNG10A0A024R161 153 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 ZNF213O14771 459 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 FOXP2O15409 715 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 NOVP48745 357 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 LRRC26Q2I0M4 334 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 AKNAD1Q5T1N1 836 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 GJC2Q5T442 439 aaPredicted RBP16.59■□□□□ 0.25
TPM1-223ENST00000560445 IQCA1Q86XH1 822 aa16.59■□□□□ 0.25
TPM1-223ENST00000560445 UBE2OQ9C0C9 1292 aaKnown RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms