RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	ARID1B	Q8NFD5	2236 aa	Predicted RBP	6.27	□□□□□ -1.4
TPM1-222	ENST00000560131	SETBP1	Q9Y6X0	1596 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	CARMIL2	Q6F5E8	1435 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	GFRA2	O00451	464 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SOX1	O00570	391 aa	Predicted RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	HYAL3	O43820	417 aa	Predicted RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	EIF4EBP3	O60516	100 aa	Predicted RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	DIAPH1	O60610	1272 aa	Known RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	GSTP1	P09211	210 aa	Known RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SPATA31C1	P0DKV0	1188 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	CDC27	P30260	824 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SSRP1	Q08945	709 aa	Known RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	KIAA2012	Q0VF49	1180 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	MLEC	Q14165	292 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	TKFC	Q3LXA3	575 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	INTS3	Q68E01	1043 aa	Known RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	CACTIN-AS1	Q8N1I8	211 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	TAB3	Q8N5C8	712 aa	Predicted RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	TTC9	Q92623	222 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SMG9	Q9H0W8	520 aa	Known RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SH2B1	Q9NRF2	756 aa	Predicted RBP	6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SPTLC3	Q9NUV7	552 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	FRRS1L	Q9P0K9	344 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SLC6A14	Q9UN76	642 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	TRIM33	Q9UPN9	1127 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	PTCH2	Q9Y6C5	1203 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	SNCAIP	Q9Y6H5	919 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	NSD2	O96028	1365 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	PIK3R4	Q99570	1358 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	IFT172	Q9UG01	1749 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	ERCC6	Q03468	1493 aa		6.27	□□□□□ -1.41
TPM1-222	ENST00000560131	ZC3H13	Q5T200	1668 aa	Known RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	DEPDC5	O75140	1603 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	C2CD2L	O14523	706 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	ASMTL	O95671	621 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	TPM3	P06753	285 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	VIL1	P09327	827 aa	Known RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	GABPB1	Q06547	395 aa	Predicted RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	PLEKHG6	Q3KR16	790 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	DALRD3	Q5D0E6	543 aa	Known RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	CCDC181	Q5TID7	509 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	EEPD1	Q7L9B9	569 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	TMEM40	Q8WWA1	233 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	PIBF1	Q8WXW3	757 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	GCC1	Q96CN9	775 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	IRF2BPL	Q9H1B7	796 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	SOX17	Q9H6I2	414 aa	Predicted RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	AVEN	Q9NQS1	362 aa	Predicted RBP	6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	PCDHA4	Q9UN74	947 aa		6.26	□□□□□ -1.41
TPM1-222	ENST00000560131	PPIP5K1	Q6PFW1	1433 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	TRAPPC8	Q9Y2L5	1435 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	MAP3K4	Q9Y6R4	1608 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131		B2RBV5	119 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	HTR3B	O95264	441 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	PARN	O95453	639 aa	Known RBP	6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	HCLS1	P14317	486 aa	Predicted RBP	6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	CDK8	P49336	464 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	PCBP4	P57723	403 aa	Known RBP	6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	NCAPH	Q15003	741 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	LONRF2	Q1L5Z9	754 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	HGSNAT	Q68CP4	663 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	MCTP1	Q6DN14	999 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	KRT26	Q7Z3Y9	468 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	PDCL2	Q8N4E4	241 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	ZSWIM2	Q8NEG5	633 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	GPBAR1	Q8TDU6	330 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	STAG1	Q8WVM7	1258 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	LPIN3	Q9BQK8	851 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	ZBTB40	Q9NUA8	1239 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	PLAA	Q9Y263	795 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	TACC3	Q9Y6A5	838 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	KIF24	Q5T7B8	1368 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	ATP10B	O94823	1461 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	NRXN1	Q9ULB1	1477 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	TET3	O43151	1660 aa		6.25	□□□□□ -1.41
TPM1-222	ENST00000560131	VWDE	Q8N2E2	1590 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	PLEKHD1	A6NEE1	506 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	SLC22A31	A6NKX4	558 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ADARB2-AS1	A8MUL3	147 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131		H3BRJ5	948 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	IPO8	O15397	1037 aa	Known RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	PAX4	O43316	350 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	SELP	P16109	830 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	EPHA1	P21709	976 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	GSTM4	Q03013	218 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ALDH1L2	Q3SY69	923 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ZC3H12B	Q5HYM0	836 aa	Known RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	MRM1	Q6IN84	353 aa	Known RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ATF7IP	Q6VMQ6	1270 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	UNC5A	Q6ZN44	842 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	HDX	Q7Z353	690 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	CHD1L	Q86WJ1	897 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	CCDC146	Q8IYE0	955 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	IPO4	Q8TEX9	1081 aa	Known RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ANKRD7	Q92527	254 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	SYAP1	Q96A49	352 aa	Predicted RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	IL17RA	Q96F46	866 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	SPATA9	Q9BWV2	254 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	PLVAP	Q9BX97	442 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	KRT82	Q9NSB4	513 aa		6.24	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms