RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RAVER2Q9HCJ3 691 aaKnown RBP21.09■□□□□ 0.97
HDDC3-205ENST00000559898 FGAP02671 866 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 FCER1AP12319 257 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 SNAP25P60880 206 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 MCMDC2Q4G0Z9 681 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 SLFN13Q68D06 897 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 SNRNP48Q6IEG0 339 aaKnown RBP21.08■□□□□ 0.97
HDDC3-205ENST00000559898 CPXCR1Q8N123 301 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 NR2E3Q9Y5X4 410 aa21.08■□□□□ 0.97
HDDC3-205ENST00000559898 SLC25A27O95847 323 aa21.07■□□□□ 0.96
HDDC3-205ENST00000559898 HSPD1P10809 573 aaKnown RBP21.07■□□□□ 0.96
HDDC3-205ENST00000559898 HAND2P61296 217 aa21.07■□□□□ 0.96
HDDC3-205ENST00000559898 ZNF792Q3KQV3 632 aa21.07■□□□□ 0.96
HDDC3-205ENST00000559898 GJC2Q5T442 439 aaPredicted RBP21.07■□□□□ 0.96
HDDC3-205ENST00000559898 ABRAQ8N0Z2 381 aa21.07■□□□□ 0.96
HDDC3-205ENST00000559898 ANAPC4Q9UJX5 808 aa21.07■□□□□ 0.96
HDDC3-205ENST00000559898 MCM3APO60318 1980 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 SZT2Q5T011 3432 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 CAPN2P17655 700 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 PDE4AP27815 886 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 ALX1Q15699 326 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 GMCL1P1Q8NEA9 526 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 LENG1Q96BZ8 264 aaPredicted RBP21.06■□□□□ 0.96
HDDC3-205ENST00000559898 MTMR7Q9Y216 660 aa21.06■□□□□ 0.96
HDDC3-205ENST00000559898 TMEM232C9JQI7 657 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 RANBP6O60518 1105 aaKnown RBP21.05■□□□□ 0.96
HDDC3-205ENST00000559898 BMP3P12645 472 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 SDSP20132 328 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 MCCP23508 829 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 KCTD1Q719H9 257 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 PRPF38AQ8NAV1 312 aaKnown RBP21.05■□□□□ 0.96
HDDC3-205ENST00000559898 SENP6Q9GZR1 1112 aaPredicted RBP21.05■□□□□ 0.96
HDDC3-205ENST00000559898 SLC38A10Q9HBR0 1119 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 ZNF287Q9HBT7 754 aa21.05■□□□□ 0.96
HDDC3-205ENST00000559898 TSPY2A6NKD2 308 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 SLC3A2P08195 630 aaKnown RBP21.04■□□□□ 0.96
HDDC3-205ENST00000559898 FGRP09769 529 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 ATN1P54259 1190 aaPredicted RBP21.04■□□□□ 0.96
HDDC3-205ENST00000559898 AAMPQ13685 434 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 RRP12Q5JTH9 1297 aaKnown RBP21.04■□□□□ 0.96
HDDC3-205ENST00000559898 FGD4Q96M96 766 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 TEX13BQ9BXU2 312 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 IL25Q9H293 177 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 OSBPL3Q9H4L5 887 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 STX8Q9UNK0 236 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 CCDC171Q6TFL3 1326 aa21.04■□□□□ 0.96
HDDC3-205ENST00000559898 SOX1O00570 391 aaPredicted RBP21.03■□□□□ 0.96
HDDC3-205ENST00000559898 KCTD2Q14681 263 aa21.03■□□□□ 0.96
HDDC3-205ENST00000559898 TBC1D10CQ8IV04 446 aa21.03■□□□□ 0.96
HDDC3-205ENST00000559898 FEM1BQ9UK73 627 aa21.03■□□□□ 0.96
HDDC3-205ENST00000559898 ISY1Q9ULR0 285 aaKnown RBP21.03■□□□□ 0.96
HDDC3-205ENST00000559898 DDX49Q9Y6V7 483 aaKnown RBP21.03■□□□□ 0.96
HDDC3-205ENST00000559898 ZNF536O15090 1300 aa21.03■□□□□ 0.96
HDDC3-205ENST00000559898 SEPT4O43236 478 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 ORC4O43929 436 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 ZBED4O75132 1171 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 ZNF865P0CJ78 1059 aaPredicted RBP21.02■□□□□ 0.96
HDDC3-205ENST00000559898 NOVP48745 357 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 TTBK2Q6IQ55 1244 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 AGBL1Q96MI9 1066 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 GDF15Q99988 308 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 TINF2Q9BSI4 451 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 HOMER2Q9NSB8 354 aa21.02■□□□□ 0.96
HDDC3-205ENST00000559898 LCTP09848 1927 aa21.02■□□□□ 0.95
HDDC3-205ENST00000559898 LAMA4Q16363 1823 aa21.01■□□□□ 0.95
HDDC3-205ENST00000559898 DNAJC25-GNG10A0A024R161 153 aa21.01■□□□□ 0.95
HDDC3-205ENST00000559898 MYCNP04198 464 aaPredicted RBP21.01■□□□□ 0.95
HDDC3-205ENST00000559898 IRX5P78411 483 aaPredicted RBP21.01■□□□□ 0.95
HDDC3-205ENST00000559898 CWC27Q6UX04 472 aaKnown RBP21.01■□□□□ 0.95
HDDC3-205ENST00000559898 TOMM22Q9NS69 142 aa21.01■□□□□ 0.95
HDDC3-205ENST00000559898 ATP2A1O14983 1001 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 SNAI1O95863 264 aaPredicted RBP21■□□□□ 0.95
HDDC3-205ENST00000559898 SLC1A4P43007 532 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 MAGEA10P43363 369 aaPredicted RBP21■□□□□ 0.95
HDDC3-205ENST00000559898 GMCL1Q96IK5 515 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 SLC5A4Q9NY91 659 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 SYNPO2Q9UMS6 1093 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 NEDD4P46934 1319 aa21■□□□□ 0.95
HDDC3-205ENST00000559898 DNM1LO00429 736 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 ADCY6O43306 1168 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 GSPT1P15170 499 aaKnown RBP20.99■□□□□ 0.95
HDDC3-205ENST00000559898 SLC16A2P36021 539 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 CNTN2Q02246 1040 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 LRRC41Q15345 812 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 RCSD1Q6JBY9 416 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 CCDC174Q6PII3 467 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 STAG1Q8WVM7 1258 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 FERMT2Q96AC1 680 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 TMEM47Q9BQJ4 181 aa20.99■□□□□ 0.95
HDDC3-205ENST00000559898 MSCO60682 206 aa20.98■□□□□ 0.95
HDDC3-205ENST00000559898 PGK1P00558 417 aa20.98■□□□□ 0.95
HDDC3-205ENST00000559898 STAT2P52630 851 aa20.98■□□□□ 0.95
HDDC3-205ENST00000559898 PURBQ96QR8 312 aaKnown RBP20.98■□□□□ 0.95
HDDC3-205ENST00000559898 ZKSCAN3Q9BRR0 538 aa20.98■□□□□ 0.95
HDDC3-205ENST00000559898 PRR12Q9ULL5 1215 aa20.98■□□□□ 0.95
HDDC3-205ENST00000559898 DIS3Q9Y2L1 958 aaKnown RBP20.98■□□□□ 0.95
HDDC3-205ENST00000559898 FRMPD2Q68DX3 1309 aaPredicted RBP20.98■□□□□ 0.95
HDDC3-205ENST00000559898 LTBP2Q14767 1821 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 PTGS1P23219 599 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 COPB2P35606 906 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms