RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 COA7Q96BR5 231 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 FAM163AQ96GL9 167 aaPredicted RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 PRIMPOLQ96LW4 560 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 BIN2Q9UBW5 565 aaPredicted RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 PARP3Q9Y6F1 533 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 NPR1P16066 1061 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 GNAQP50148 359 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 RBM5P52756 815 aaKnown RBP eCLIP12.06□□□□□ -0.48
CUX1-217ENST00000558836 DPYDQ12882 1025 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 JAKMIP3Q5VZ66 844 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 AKT1S1Q96B36 256 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 UIMC1Q96RL1 719 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 TMEM260Q9NX78 707 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 MYH1P12882 1939 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 DDX60LQ5H9U9 1706 aaKnown RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 M0R2N6 131 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 GSDMDP57764 484 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 E4F1Q66K89 784 aaPredicted RBP12.06□□□□□ -0.48
CUX1-217ENST00000558836 SPATA20Q8TB22 786 aa12.06□□□□□ -0.48
CUX1-217ENST00000558836 CCNT1O60563 726 aaKnown RBP12.05□□□□□ -0.48
CUX1-217ENST00000558836 BMP15O95972 392 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 TOP1P11387 765 aaKnown RBP12.05□□□□□ -0.48
CUX1-217ENST00000558836 SLC16A2P36021 539 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 NAA30Q147X3 362 aaPredicted RBP12.05□□□□□ -0.48
CUX1-217ENST00000558836 E2F4Q16254 413 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 CDC42EP5Q6NZY7 148 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 SH3RF1Q7Z6J0 888 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 CCAR2Q8N163 923 aaKnown RBP12.05□□□□□ -0.48
CUX1-217ENST00000558836 IQUBQ8NA54 791 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 IMPACTQ9P2X3 320 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 NEMFO60524 1076 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 ADKP55263 362 aaKnown RBP12.05□□□□□ -0.48
CUX1-217ENST00000558836 CEP135Q66GS9 1140 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 TTBK2Q6IQ55 1244 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 MTMR4Q9NYA4 1195 aa12.05□□□□□ -0.48
CUX1-217ENST00000558836 ANKRD31Q8N7Z5 1873 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 DYNC1I1O14576 645 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 TEX33O43247 280 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 PDHBP11177 359 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 TRAPPC10P48553 1259 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 PTPN14Q15678 1187 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 CCDC178Q5BJE1 867 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 APOBEC3HQ6NTF7 200 aaKnown RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 PDXDC2PQ6P474 469 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 DTHD1Q6ZMT9 781 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 VSTM4Q8IW00 320 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 ELOA2Q8IYF1 753 aaPredicted RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 ENOX1Q8TC92 643 aaKnown RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 RRP36Q96EU6 259 aaKnown RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 EEF2KMTQ96G04 330 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 TMX4Q9H1E5 349 aaPredicted RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 SEC63Q9UGP8 760 aaKnown RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 ALDH1B1P30837 517 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 DHX8Q14562 1220 aaKnown RBP12.04□□□□□ -0.48
CUX1-217ENST00000558836 C2CD5Q86YS7 1000 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 SH3GLB2Q9NR46 395 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 SERPINB13Q9UIV8 391 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 CTNND2Q9UQB3 1225 aa12.04□□□□□ -0.48
CUX1-217ENST00000558836 PPP1R3GB7ZBB8 358 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 ZNF18P17022 549 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 PDE6BP35913 854 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 STAT6P42226 847 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 RRAGBQ5VZM2 374 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 KCTD1Q719H9 257 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 CCDC148Q8NFR7 591 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 LRRC15Q8TF66 581 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 CPLX3Q8WVH0 158 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 MASTLQ96GX5 879 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 GDAQ9Y2T3 454 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 ADAMTSL1Q8N6G6 1762 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 ZBTB22O15209 634 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 CBFA2T2O43439 604 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 GABPAQ06546 454 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 PAXIP1Q6ZW49 1069 aaPredicted RBP12.03□□□□□ -0.48
CUX1-217ENST00000558836 ZSCAN29Q8IWY8 852 aaPredicted RBP12.03□□□□□ -0.48
CUX1-217ENST00000558836 CCDC150Q8NCX0 1101 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 DACH1Q9UI36 760 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 UBA7P41226 1012 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 TECP42680 631 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 NAALADL2Q58DX5 795 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 SOGA3Q5TF21 947 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 ZNF710Q8N1W2 664 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 TRIML1Q8N9V2 468 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 TBCKQ8TEA7 893 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 GJA10Q969M2 543 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 TEKT1Q969V4 418 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 CCDC34Q96HJ3 373 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 PDGFDQ9GZP0 370 aaPredicted RBP12.03□□□□□ -0.48
CUX1-217ENST00000558836 ZMYND12Q9H0C1 365 aa12.03□□□□□ -0.48
CUX1-217ENST00000558836 SHMT1P34896 483 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 CCT6AP40227 531 aaKnown RBP12.02□□□□□ -0.49
CUX1-217ENST00000558836 CRKP46108 304 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 CERS3Q8IU89 383 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 FAM177A1Q8N128 213 aaPredicted RBP12.02□□□□□ -0.49
CUX1-217ENST00000558836 GSDMAQ96QA5 445 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 SPZ1Q9BXG8 430 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.02□□□□□ -0.49
CUX1-217ENST00000558836 SYNRGQ9UMZ2 1314 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 V9GYY5 206 aaPredicted RBP12.02□□□□□ -0.49
CUX1-217ENST00000558836 PLSCR1O15162 318 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms