RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 SHOXO15266 292 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 TPD52L2O43399 206 aaKnown RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 PRC1O43663 620 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 PPM1BO75688 479 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 WISP1O95388 367 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 EYA4O95677 639 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 CST3P01034 146 aaPredicted RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 CAPNS1P04632 268 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 C6orf222P0C671 652 aaPredicted RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF460Q14592 562 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 DUOXA2Q1HG44 320 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 TRIM61Q5EBN2 209 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 PKN3Q6P5Z2 889 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 LHFPL2Q6ZUX7 228 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 DDX46Q7L014 1031 aaKnown RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 FGD2Q7Z6J4 655 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 BVESQ8NE79 360 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 SLC7A14Q8TBB6 771 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 BTN2A2Q8WVV5 523 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 MRGPRX3Q96LB0 322 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 SMAD5Q99717 465 aaKnown RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 PLVAPQ9BX97 442 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 TMPRSS13Q9BYE2 586 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 ATXN3LQ9H3M9 355 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 SLC52A2Q9HAB3 445 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 WHRNQ9P202 907 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 TNPO3Q9Y5L0 923 aaKnown RBP4.23□□□□□ -1.73
TRAV28-201ENST00000557548 PLEKHD1A6NEE1 506 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 OPA1O60313 960 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 KPNA6O60684 536 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 EIF5BO60841 1220 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 RNGTTO60942 597 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 ADH5P11766 374 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 NID1P14543 1247 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 CPEP16870 476 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 CD247P20963 164 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 CAP2P40123 477 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 NEK4P51957 841 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 EPHB1P54762 984 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 PPP2R5AQ15172 486 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 LRRC41Q15345 812 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 PCBP1Q15365 356 aaKnown RBP eCLIP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 SF1Q15637 639 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 SEPT7Q16181 437 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 NFE2Q16621 373 aaPredicted RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 TRIM59Q8IWR1 403 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 C7orf61Q8IZ16 206 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 KCT2Q8NC54 265 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 ISL2Q96A47 359 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 MTMR8Q96EF0 704 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 C8orf48Q96LL4 319 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 NACC1Q96RE7 527 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 KRTAP9-3Q9BYQ3 159 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 ASPSCR1Q9BZE9 553 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 FOXQ1Q9C009 403 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 PIDD1Q9HB75 910 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 SSU72Q9NP77 194 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 PRDM6Q9NQX0 595 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 CGGBP1Q9UFW8 167 aaPredicted RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 AKT3Q9Y243 479 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 EMC9Q9Y3B6 208 aa4.22□□□□□ -1.73
TRAV28-201ENST00000557548 OAS3Q9Y6K5 1087 aaKnown RBP4.22□□□□□ -1.73
TRAV28-201ENST00000557548 LOC102724159A0A0B4J2E5 919 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 TSPAN6O43657 245 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 DLX3O60479 287 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 KCNH1O95259 989 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 RASGRP1O95267 797 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 SCGB1D2O95969 90 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 ITGA4P13612 1032 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 DRD2P14416 443 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 GABREP78334 506 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 MCL1Q07820 350 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 AUHQ13825 339 aaKnown RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 COL9A3Q14050 684 aaPredicted RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 PWP2Q15269 919 aaKnown RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 PRRT3Q5FWE3 981 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 NBPF12Q5TAG4 269 aaPredicted RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 NUTM2GQ5VZR2 741 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 POMZP3Q6PJE2 187 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 ACAD11Q709F0 780 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 ARMCX6Q7L4S7 300 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 DYMQ7RTS9 669 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 CCAR1Q8IX12 1150 aaKnown RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 EXOC8Q8IYI6 725 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 AHI1Q8N157 1196 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 CRACR2BQ8N4Y2 399 aaPredicted RBP4.21□□□□□ -1.74
TRAV28-201ENST00000557548 GSTCDQ8NEC7 633 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 WDR66Q8TBY9 1149 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 PPP1R13LQ8WUF5 828 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 BRF1Q92994 677 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 TRIM11Q96F44 468 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 SCLYQ96I15 445 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 KREMEN1Q96MU8 473 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 GP6Q9HCN6 339 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 SLC5A4Q9NY91 659 aa4.21□□□□□ -1.74
TRAV28-201ENST00000557548 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.2□□□□□ -1.74
TRAV28-201ENST00000557548 SHTN1A0MZ66 631 aa4.2□□□□□ -1.74
TRAV28-201ENST00000557548 GPR39O43194 453 aa4.2□□□□□ -1.74
TRAV28-201ENST00000557548 EFCAB14O75071 495 aa4.2□□□□□ -1.74
TRAV28-201ENST00000557548 ASLP04424 464 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms