RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MAP3K14Q99558 947 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 SLF1Q9BQI6 1058 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 NCOA5Q9HCD5 579 aaKnown RBP14.95□□□□□ -0.02
SHMT2-227ENST00000557269 TXNRD2Q9NNW7 524 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 RBPJLQ9UBG7 517 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 PRR12Q9ULL5 1215 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 ADAMTS5Q9UNA0 930 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 CA12O43570 354 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CYTH3O43739 400 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 PLA2G6O60733 806 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 DTNBO60941 627 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CNMDO75829 334 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CALM1P0DP23 149 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CALM2P0DP24 149 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CALM3P0DP25 149 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 ADD1P35611 737 aaKnown RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 METAP2P50579 478 aaKnown RBP eCLIP14.94□□□□□ -0.021e-6■■■□□ 18.9
SHMT2-227ENST00000557269 STAT2P52630 851 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 IKQ13123 557 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 ANKRD1Q15327 319 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 RTN1Q16799 776 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 SYDE2Q5VT97 1194 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 SRBD1Q8N5C6 995 aaKnown RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 NECAB1Q8N987 351 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 JMYQ8N9B5 988 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 PRPF38AQ8NAV1 312 aaKnown RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CTCFLQ8NI51 663 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 PARK7Q99497 189 aaKnown RBP14.94□□□□□ -0.02
SHMT2-227ENST00000557269 WBP1LQ9NX94 342 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 HOXC10Q9NYD6 342 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 BTBD7Q9P203 1132 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 CPA4Q9UI42 421 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 PNMA3Q9UL41 463 aa14.94□□□□□ -0.02
SHMT2-227ENST00000557269 VWA5AO00534 786 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 ALDH1A1P00352 501 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 RCAN1P53805 252 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 MAP2K1Q02750 393 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-227ENST00000557269 FUT2Q10981 343 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 ST3GAL1Q11201 340 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 SCRN1Q12765 414 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 LBX2Q6XYB7 198 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 TMTC3Q6ZXV5 915 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 FAM160B2Q86V87 743 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 ADGRF4Q8IZF3 695 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 CCDC82Q8N4S0 544 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 REPS2Q8NFH8 660 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 SMCR8Q8TEV9 937 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-227ENST00000557269 CHURC1Q8WUH1 139 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 ZFYVE28Q9HCC9 887 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 VAT1LQ9HCJ6 419 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 TSKSQ9UJT2 592 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 LIMCH1Q9UPQ0 1083 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 NID2Q14112 1375 aa14.93□□□□□ -0.02
SHMT2-227ENST00000557269 MYPNQ86TC9 1320 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 CEP350Q5VT06 3117 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 ST18O60284 1047 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 TLR2O60603 784 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 PFKFB2O60825 505 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 PPFIA3O75145 1194 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 TAL1P17542 331 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-227ENST00000557269 KIF5BP33176 963 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 Q3C1V9 767 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 C17orf99Q6UX52 265 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 ANKRD13CQ8N6S4 541 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 PAGR1Q9BTK6 254 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 JMJD4Q9H9V9 463 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 ZNF536O15090 1300 aa14.92□□□□□ -0.02
SHMT2-227ENST00000557269 hCG_1642624A0A1W2PR95 340 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 BCRP11274 1271 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 TMEM132BQ14DG7 1078 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 NTRK3Q16288 839 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 PIBF1Q8WXW3 757 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 CFHR5Q9BXR6 569 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 SLKQ9H2G2 1235 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-227ENST00000557269 RANBP17Q9H2T7 1088 aaKnown RBP14.91□□□□□ -0.02
SHMT2-227ENST00000557269 RIOX1Q9H6W3 641 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 SLC38A10Q9HBR0 1119 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 RAVER2Q9HCJ3 691 aaKnown RBP14.91□□□□□ -0.02
SHMT2-227ENST00000557269 RBM28Q9NW13 759 aaKnown RBP14.91□□□□□ -0.02
SHMT2-227ENST00000557269 A0A0G2JMZ2 1700 aa14.91□□□□□ -0.02
SHMT2-227ENST00000557269 PPP1R11O60927 126 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-227ENST00000557269 CTDNEP1O95476 244 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 GCLCP48506 637 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-227ENST00000557269 CCDC174Q6PII3 467 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 MTMR8Q96EF0 704 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 PIGSQ96S52 555 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 SAGE1Q9NXZ1 904 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 MORF4L1Q9UBU8 362 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 ZNF214Q9UL59 606 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-227ENST00000557269 CNTNAP5Q8WYK1 1306 aa14.9□□□□□ -0.02
SHMT2-227ENST00000557269 COL11A1P12107 1806 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-227ENST00000557269 DHX16O60231 1041 aaKnown RBP14.89□□□□□ -0.03
SHMT2-227ENST00000557269 ZBED4O75132 1171 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 ECM2O94769 699 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-227ENST00000557269 SMARCA1P28370 1054 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 GNAQP50148 359 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 CAP1Q01518 475 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 CDC37Q16543 378 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-227ENST00000557269 QRICH1Q2TAL8 776 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 CPXCR1Q8N123 301 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms