RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	CCDC85B	Q15834	202 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	SLC44A5	Q8NCS7	719 aa		10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	SSH3	Q8TE77	659 aa		10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	TIFA	Q96CG3	184 aa		10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	EAF2	Q96CJ1	260 aa	Predicted RBP	10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	RIOK1	Q9BRS2	568 aa	Known RBP	10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	PRDM12	Q9H4Q4	367 aa		10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	PLA2G2E	Q9NZK7	142 aa		10.51	□□□□□ -0.73
SYNE2-222	ENST00000556725	MYO9B	Q13459	2157 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	SMIM22	K7EJ46	135 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	IGSF3	O75054	1194 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ADAMTS4	O75173	837 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	TIMP1	P01033	207 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ATP8B2	P98198	1209 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ADGRE1	Q14246	886 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ZNF792	Q3KQV3	632 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	TMEM240	Q5SV17	173 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ANKRD33	Q7Z3H0	272 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	RNF180	Q86T96	592 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	MB21D1	Q8N884	522 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	FRAT1	Q92837	279 aa	Predicted RBP	10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	DYNLL2	Q96FJ2	89 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	ASB2	Q96Q27	587 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	TINF2	Q9BSI4	451 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	PBX4	Q9BYU1	374 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	C1orf115	Q9H7X2	142 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	FBXO28	Q9NVF7	368 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	XIRP2	A4UGR9	3374 aa		10.5	□□□□□ -0.73
SYNE2-222	ENST00000556725	PARP14	Q460N5	1801 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	MAGEB6P1	A0A0J9YX57	407 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	DCDC2C	A8MYV0	355 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	ACR	P10323	421 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	AKR1B1	P15121	316 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	ACLY	P53396	1101 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	MAP3K12	Q12852	859 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	KCNA10	Q16322	511 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	CCDC129	Q6ZRS4	1044 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	CERS3	Q8IU89	383 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	TMEM57	Q8N5G2	664 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	KLHDC9	Q8NEP7	349 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	SDR42E1	Q8WUS8	393 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	ATXN2L	Q8WWM7	1075 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	TOX2	Q96NM4	488 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	GAS2L1	Q99501	681 aa	Predicted RBP	10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	MMP19	Q99542	508 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	STARD7	Q9NQZ5	370 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	MCM9	Q9NXL9	1143 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	NRBP1	Q9UHY1	535 aa		10.49	□□□□□ -0.73
SYNE2-222	ENST00000556725	TCF20	Q9UGU0	1960 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	MYADML2	A6NDP7	307 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	SLC25A27	O95847	323 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	CSF2RA	P15509	400 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	RASIP1	Q5U651	963 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	MFSD5	Q6N075	450 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	TMEM179	Q6ZVK1	233 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	ADAMTS19	Q8TE59	1207 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	TSEN34	Q9BSV6	310 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	VCPKMT	Q9H867	229 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	THEG	Q9P2T0	379 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	TBX21	Q9UL17	535 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	ADAMTS5	Q9UNA0	930 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	NOP58	Q9Y2X3	529 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	TMX2	Q9Y320	296 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	NAV1	Q8NEY1	1877 aa		10.48	□□□□□ -0.73
SYNE2-222	ENST00000556725	IPO8	O15397	1037 aa	Known RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	SNAI1	O95863	264 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	AKR1A1	P14550	325 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	IGFBP4	P22692	258 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	PLA2G5	P39877	138 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	CDK7	P50613	346 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	MRPS5	P82675	430 aa	Known RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	SLFNL1	Q499Z3	407 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	AKNAD1	Q5T1N1	836 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	ZNF365	Q70YC5	407 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	RIOX2	Q8IUF8	465 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	REPS2	Q8NFH8	660 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	NUP133	Q8WUM0	1156 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	NECAB3	Q96P71	396 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	UHRF1	Q96T88	793 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	DIS3	Q9Y2L1	958 aa	Known RBP	10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	SYNRG	Q9UMZ2	1314 aa		10.47	□□□□□ -0.73
SYNE2-222	ENST00000556725	CYP2D7	A0A087X1C5	515 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	VWA5A	O00534	786 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	WDR46	O15213	610 aa	Known RBP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	ADCY6	O43306	1168 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	PRKAB2	O43741	272 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	EEF2	P13639	858 aa	Known RBP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	PDE6A	P16499	860 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	STAT3	P40763	770 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	ICA1	Q05084	483 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	PPIG	Q13427	754 aa	Known RBP eCLIP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	KCTD2	Q14681	263 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	SLC9C2	Q5TAH2	1124 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	LCORL	Q8N3X6	602 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	VTI1A	Q96AJ9	217 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	PPP1R12C	Q9BZL4	782 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	NKX2-4	Q9H2Z4	354 aa		10.46	□□□□□ -0.73

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