RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 FLT1P17948 1338 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 SLC15A5A6NIM6 579 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 C19orf81C9J6K1 198 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 KBTBD13C9JR72 458 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 TNFRSF10AO00220 468 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 ARHGAP33O14559 1287 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 BAG3O95817 575 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 GH2P01242 217 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 CYBAP13498 195 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 PTPREP23469 700 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 SMAD3P84022 425 aaKnown RBP12.21□□□□□ -0.45
SCFD1-220ENST00000556486 ATP8B2P98198 1209 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 TMED8Q6PL24 325 aaPredicted RBP12.21□□□□□ -0.45
SCFD1-220ENST00000556486 USP17L2Q6R6M4 530 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 FRAT1Q92837 279 aaPredicted RBP12.21□□□□□ -0.45
SCFD1-220ENST00000556486 RNPC3Q96LT9 517 aaKnown RBP12.21□□□□□ -0.45
SCFD1-220ENST00000556486 NOL10Q9BSC4 688 aaKnown RBP12.21□□□□□ -0.45
SCFD1-220ENST00000556486 IVNS1ABPQ9Y6Y0 642 aa12.21□□□□□ -0.45
SCFD1-220ENST00000556486 REV3LO60673 3130 aa12.21□□□□□ -0.46
SCFD1-220ENST00000556486 MYH1P12882 1939 aa12.21□□□□□ -0.46
SCFD1-220ENST00000556486 CYP2E1P05181 493 aaPredicted RBP12.2□□□□□ -0.46
SCFD1-220ENST00000556486 LSM11P83369 360 aaKnown RBP eCLIP12.2□□□□□ -0.463e-6■□□□□ 10
SCFD1-220ENST00000556486 RAB3GAP1Q15042 981 aa12.2□□□□□ -0.46
SCFD1-220ENST00000556486 TJAP1Q5JTD0 557 aa12.2□□□□□ -0.46
SCFD1-220ENST00000556486 CCDC158Q5M9N0 1113 aa12.2□□□□□ -0.46
SCFD1-220ENST00000556486 NAA16Q6N069 864 aaPredicted RBP12.2□□□□□ -0.46
SCFD1-220ENST00000556486 CERS3Q8IU89 383 aa12.2□□□□□ -0.46
SCFD1-220ENST00000556486 FOXP4Q8IVH2 680 aaPredicted RBP12.2□□□□□ -0.46
SCFD1-220ENST00000556486 RABGAP1Q9Y3P9 1069 aa12.2□□□□□ -0.46
SCFD1-220ENST00000556486 DDX11L8A8MPP1 907 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L15C9J2P7 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L13C9JLJ4 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L11C9JVI0 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L18D6R9N7 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L22D6RA61 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L17D6RBQ6 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L19D6RCP7 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L20D6RJB6 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 GLRX3O76003 335 aaKnown RBP12.19□□□□□ -0.46
SCFD1-220ENST00000556486 NDUFV2P19404 249 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 DYNLL1P63167 89 aaKnown RBP12.19□□□□□ -0.46
SCFD1-220ENST00000556486 CCNA1P78396 465 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 TLE2Q04725 743 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 USP17L24Q0WX57 530 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 GRB14Q14449 540 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 DPP9Q86TI2 863 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 RGS22Q8NE09 1264 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 ACER1Q8TDN7 264 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 DBNDD2Q9BQY9 259 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 PCDHB15Q9Y5E8 787 aa12.19□□□□□ -0.46
SCFD1-220ENST00000556486 CHD9Q3L8U1 2897 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 MSCO60682 206 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 VCAM1P19320 739 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 ADORA2AP29274 412 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 CCDC85BQ15834 202 aaPredicted RBP12.18□□□□□ -0.46
SCFD1-220ENST00000556486 FAM47AQ5JRC9 791 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 TTC39AQ5SRH9 613 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 CATSPERGQ6ZRH7 1159 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 ARRDC4Q8NCT1 418 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 GTF3C2Q8WUA4 911 aaPredicted RBP12.18□□□□□ -0.46
SCFD1-220ENST00000556486 DBNLQ9UJU6 430 aaKnown RBP12.18□□□□□ -0.46
SCFD1-220ENST00000556486 PLXNA1Q9UIW2 1896 aa12.18□□□□□ -0.46
SCFD1-220ENST00000556486 PQBP1O60828 265 aaKnown RBP12.17□□□□□ -0.46
SCFD1-220ENST00000556486 SURF6O75683 361 aaKnown RBP12.17□□□□□ -0.46
SCFD1-220ENST00000556486 DNAJB2P25686 324 aa12.17□□□□□ -0.46
SCFD1-220ENST00000556486 LRRC41Q15345 812 aa12.17□□□□□ -0.46
SCFD1-220ENST00000556486 LENG1Q96BZ8 264 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-220ENST00000556486 RPAP3Q9H6T3 665 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-220ENST00000556486 SMCHD1A6NHR9 2005 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 GRXCR1A8MXD5 290 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 COBLO75128 1261 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 HOXC6P09630 235 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 ZAP70P43403 619 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 MFAP1P55081 439 aaKnown RBP12.16□□□□□ -0.46
SCFD1-220ENST00000556486 SNX17Q15036 470 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 MIGA1Q8NAN2 632 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 EAF2Q96CJ1 260 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-220ENST00000556486 MOV10L1Q9BXT6 1211 aaKnown RBP12.16□□□□□ -0.46
SCFD1-220ENST00000556486 EHD4Q9H223 541 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 ZNF576Q9H609 170 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 PIH1D3Q9NQM4 214 aaKnown RBP12.16□□□□□ -0.46
SCFD1-220ENST00000556486 ZNF236Q9UL36 1845 aa12.16□□□□□ -0.46
SCFD1-220ENST00000556486 TCF20Q9UGU0 1960 aaKnown RBP12.16□□□□□ -0.46
SCFD1-220ENST00000556486 XIRP2A4UGR9 3374 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 SEPT4O43236 478 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 PGK1P00558 417 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 HLA-DOAP06340 250 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 CLTBP09497 229 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 RLBP1P12271 317 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 RAG1P15918 1043 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 OS9Q13438 667 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-220ENST00000556486 PLS1Q14651 629 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 TATDN1Q6P1N9 297 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 FTSJ3Q8IY81 847 aaKnown RBP12.15□□□□□ -0.46
SCFD1-220ENST00000556486 ADAMTS19Q8TE59 1207 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 PBXIP1Q96AQ6 731 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 C12orf42Q96LP6 360 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 NECAB3Q96P71 396 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-220ENST00000556486 PRDM12Q9H4Q4 367 aa12.15□□□□□ -0.46
SCFD1-220ENST00000556486 ZNFX1Q9P2E3 1918 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms