RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TEX13BQ9BXU2 312 aa16.16■□□□□ 0.18
SHMT2-219ENST00000555563 RNF208Q9H0X6 261 aa16.16■□□□□ 0.18
SHMT2-219ENST00000555563 MROH8Q9H579 483 aa16.16■□□□□ 0.18
SHMT2-219ENST00000555563 CNNM2Q9H8M5 875 aa16.16■□□□□ 0.18
SHMT2-219ENST00000555563 SLC25A27O95847 323 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 HOXC6P09630 235 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 ADORA2AP29274 412 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 STAT3P40763 770 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 IKQ13123 557 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-219ENST00000555563 FAM160B2Q86V87 743 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 DCAF4Q8WV16 495 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 SHISA4Q96DD7 197 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 TTC14Q96N46 770 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 KRT23Q9C075 422 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 SLC38A10Q9HBR0 1119 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 TAF6LQ9Y6J9 622 aa16.15■□□□□ 0.18
SHMT2-219ENST00000555563 KIAA0100Q14667 2235 aaKnown RBP16.15■□□□□ 0.18
SHMT2-219ENST00000555563 ATP2A1O14983 1001 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 GJB1P08034 283 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 COPB2P35606 906 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 SNRNP48Q6IEG0 339 aaKnown RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 IQCA1Q86XH1 822 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 DGKHQ86XP1 1220 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 TRMT44Q8IYL2 757 aaKnown RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 CPXCR1Q8N123 301 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 NPLOC4Q8TAT6 608 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 MAP4K1Q92918 833 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 ZSCAN10Q96SZ4 725 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 LSG1Q9H089 658 aaKnown RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 FLRT1Q9NZU1 646 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 ZSWIM5Q9P217 1185 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 CTDP1Q9Y5B0 961 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 RBM8AQ9Y5S9 174 aaKnown RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 TNKSO95271 1327 aa16.14■□□□□ 0.17
SHMT2-219ENST00000555563 FRMPD2Q68DX3 1309 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-219ENST00000555563 STRNO43815 780 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 PLA2G6O60733 806 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 ZBED4O75132 1171 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 PDHBP11177 359 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 PRKAR2AP13861 404 aaKnown RBP16.13■□□□□ 0.17
SHMT2-219ENST00000555563 MAP3K21Q5TCX8 1036 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 KIAA1211Q6ZU35 1233 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 ABRAQ8N0Z2 381 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 ENAHQ8N8S7 591 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-219ENST00000555563 U2AF1L4Q8WU68 220 aaKnown RBP16.13■□□□□ 0.17
SHMT2-219ENST00000555563 CHURC1Q8WUH1 139 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.13■□□□□ 0.174e-7■□□□□ 11.2
SHMT2-219ENST00000555563 RAVER2Q9HCJ3 691 aaKnown RBP16.13■□□□□ 0.17
SHMT2-219ENST00000555563 PAK6Q9NQU5 681 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-219ENST00000555563 PPP4R2Q9NY27 417 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 RIPK3Q9Y572 518 aa16.13■□□□□ 0.17
SHMT2-219ENST00000555563 COBLO75128 1261 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 CDC45O75419 566 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 FCER1AP12319 257 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 GJA8P48165 433 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 OAZ1P54368 228 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 CCDC178Q5BJE1 867 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 TTBK2Q6IQ55 1244 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 STOX1Q6ZVD7 989 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 CYB5R4Q7L1T6 521 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 DPP9Q86TI2 863 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 MMP19Q99542 508 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 UBAC1Q9BSL1 405 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 ANO2Q9NQ90 1003 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 PRR12Q9ULL5 1215 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 MKI67P46013 3256 aaKnown RBP16.12■□□□□ 0.17
SHMT2-219ENST00000555563 BRCA2P51587 3418 aa16.12■□□□□ 0.17
SHMT2-219ENST00000555563 E7EWF7 191 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 SNHG28P0DPA3 235 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 FDX1P10109 184 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 SLC16A2P36021 539 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 SLC4A3P48751 1232 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 CACNB2Q08289 660 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-219ENST00000555563 ZNF543Q08ER8 600 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 TRDNQ13061 729 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 KCTD2Q14681 263 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 ERICH6BQ5W0A0 696 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 PNMA1Q8ND90 353 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 ANKS1AQ92625 1134 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 DEFB118Q96PH6 123 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 HMX1Q9NP08 348 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-219ENST00000555563 GPCPD1Q9NPB8 672 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 ZNF536O15090 1300 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 RPTORQ8N122 1335 aa16.11■□□□□ 0.17
SHMT2-219ENST00000555563 PLXNA1Q9UIW2 1896 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 PGK2P07205 417 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 SNAP25P60880 206 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 MFSD14CQ5VZR4 134 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 CASC1Q6TDU7 716 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 BTNL9Q6UXG8 535 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 RALYLQ86SE5 291 aaKnown RBP16.1■□□□□ 0.17
SHMT2-219ENST00000555563 KAT14Q9H8E8 782 aa16.1■□□□□ 0.17
SHMT2-219ENST00000555563 SGPL1O95470 568 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 IGHA2P01877 340 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 CCND3P30281 292 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-219ENST00000555563 CYP2C19P33261 490 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 SEC23AQ15436 765 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 HABP4Q5JVS0 413 aaKnown RBP16.09■□□□□ 0.17
SHMT2-219ENST00000555563 SYDE2Q5VT97 1194 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 OLFML2BQ68BL8 750 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms