RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 SPRED3Q2MJR0 410 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 TDRD12Q587J7 1177 aaKnown RBP9.94□□□□□ -0.82
SYNE2-217ENST00000555022 TCP11X2Q5H9J9 407 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 OR8K1Q8NGG5 319 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 CCDC114Q96M63 670 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 ZIM3Q96PE6 472 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 TANGO6Q9C0B7 1094 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.94□□□□□ -0.82
SYNE2-217ENST00000555022 NLRC4Q9NPP4 1024 aa9.94□□□□□ -0.82
SYNE2-217ENST00000555022 RGPD1P0DJD0 1748 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 WTIPA6NIX2 430 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 AKR1B10O60218 316 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 SARSP49591 514 aaKnown RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 SF3B2Q13435 895 aaKnown RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 NAA25Q14CX7 972 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 RABL6Q3YEC7 729 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 CCDC70Q6NSX1 233 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 DDX42Q86XP3 938 aaKnown RBP eCLIP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 LCORLQ8N3X6 602 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 CTCFLQ8NI51 663 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 CPVLQ9H3G5 476 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 MAGEC2Q9UBF1 373 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 NWD1Q149M9 1564 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 SPATA31D1Q6ZQQ2 1576 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 TBC1D8BQ0IIM8 1120 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 PPFIA1Q13136 1202 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 MKRN4PQ13434 485 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 RILPL1Q5EBL4 403 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 ZNF654Q8IZM8 581 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 NHEJ1Q9H9Q4 299 aaPredicted RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 EPB41L5Q9HCM4 733 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 RBM12Q9NTZ6 932 aaKnown RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 HAUS2Q9NVX0 235 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 ZNHIT6Q9NWK9 470 aaKnown RBP9.93□□□□□ -0.82
SYNE2-217ENST00000555022 TBC1D2BQ9UPU7 963 aa9.93□□□□□ -0.82
SYNE2-217ENST00000555022 FMNL1O95466 1100 aaPredicted RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 STAT6P42226 847 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 FAM47AQ5JRC9 791 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CEP85LQ5SZL2 805 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 C8orf74Q6P047 294 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 ADAT2Q7Z6V5 191 aaKnown RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 IFNL3Q8IZI9 196 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 PLBD2Q8NHP8 589 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 MTRQ99707 1265 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 SRPRBQ9Y5M8 271 aaKnown RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 GRIN2DO15399 1336 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 ZC3H4Q9UPT8 1303 aaKnown RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CPDO75976 1380 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 ANKARQ7Z5J8 1434 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 RGPD8O14715 1765 aaPredicted RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 GOLGA6L7A0A1B0GV03 622 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 KRT86O43790 486 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CCDC172P0C7W6 258 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CASP7P55210 303 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 RASSF7Q02833 373 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 KIF5AQ12840 1032 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 TTC38Q5R3I4 469 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CFAP58Q5T655 872 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CDKAL1Q5VV42 579 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 WDR59Q6PJI9 974 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CCDC42Q96M95 316 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 LAMA4Q16363 1823 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 CYP27B1O15528 508 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 ERCC5P28715 1186 aaPredicted RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 NLRP5P59047 1200 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 SPA17Q15506 151 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 KRT12Q99456 494 aa9.92□□□□□ -0.82
SYNE2-217ENST00000555022 TACO1Q9BSH4 297 aaKnown RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 NAA15Q9BXJ9 866 aaKnown RBP9.92□□□□□ -0.82
SYNE2-217ENST00000555022 SOS2Q07890 1332 aaPredicted RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 EPHB6O15197 1021 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 PHKG2P15735 406 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 ITGA6P23229 1130 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 ADD2P35612 726 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 PBX1P40424 430 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 MAEAQ7L5Y9 396 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CABS1Q96KC9 395 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CTAGE1Q96RT6 745 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CRYBG1Q9Y4K1 1723 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 RPN1P04843 607 aaKnown RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 NF2P35240 595 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 LLGL1Q15334 1064 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CRACR2BQ8N4Y2 399 aaPredicted RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CSGALNACT2Q8N6G5 542 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 FANCBQ8NB91 859 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 IFIH1Q9BYX4 1025 aaKnown RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 YY1AP1Q9H869 796 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 LRP2BPQ9P2M1 347 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CEP83Q9Y592 693 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 GLI1P08151 1106 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 FCER1AP12319 257 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 KRT2P35908 639 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CDR1P51861 262 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 CLNS1AP54105 237 aaKnown RBP9.91□□□□□ -0.82
SYNE2-217ENST00000555022 NAA35Q5VZE5 725 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 RPAINQ86UA6 219 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 MB21D1Q8N884 522 aa9.91□□□□□ -0.82
SYNE2-217ENST00000555022 BAIAP2L1Q9UHR4 511 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms