RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 IVNS1ABPQ9Y6Y0 642 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 KIAA0355O15063 1070 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 PSMA5P28066 241 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 OLFML2BQ68BL8 750 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 LBX2Q6XYB7 198 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 FOXP4Q8IVH2 680 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 TIFAQ96CG3 184 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 EAF2Q96CJ1 260 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 FEZ1Q99689 392 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 MOV10L1Q9BXT6 1211 aaKnown RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 PRDM12Q9H4Q4 367 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 GINM1Q9NU53 330 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 THEGQ9P2T0 379 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 DBNLQ9UJU6 430 aaKnown RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 TACC3Q9Y6A5 838 aa13.06□□□□□ -0.32
SHMT2-216ENST00000554975 DDX49Q9Y6V7 483 aaKnown RBP13.06□□□□□ -0.32
SHMT2-216ENST00000554975 MCM3APO60318 1980 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 PQBP1O60828 265 aaKnown RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 FPGSQ05932 587 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 KRT32Q14532 448 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 ANKRD1Q15327 319 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 CCDC85BQ15834 202 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 LRRFIP1Q32MZ4 808 aaKnown RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 DPP9Q86TI2 863 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 ANP32BQ92688 251 aaKnown RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 KCNB2Q92953 911 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 SYAP1Q96A49 352 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 NOL10Q9BSC4 688 aaKnown RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 FSD1Q9BTV5 496 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 TRIM34Q9BYJ4 488 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 PHF24Q9UPV7 400 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 ATP6V1DQ9Y5K8 247 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 MYH8P13535 1937 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 PRRC2BQ5JSZ5 2229 aaKnown RBP13.05□□□□□ -0.32
SHMT2-216ENST00000554975 PIEZO1Q92508 2521 aa13.05□□□□□ -0.32
SHMT2-216ENST00000554975 MUC6Q6W4X9 2439 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 PGK1P00558 417 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 RAG1P15918 1043 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 ATP5JP18859 108 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 ZAP70P43403 619 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 PPP4CP60510 307 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 DYNLL1P63167 89 aaKnown RBP13.04□□□□□ -0.32
SHMT2-216ENST00000554975 CSPP1Q1MSJ5 1256 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 VPS53Q5VIR6 699 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 CWC27Q6UX04 472 aaKnown RBP13.04□□□□□ -0.32
SHMT2-216ENST00000554975 LENG1Q96BZ8 264 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-216ENST00000554975 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.04□□□□□ -0.328e-8■□□□□ 11.3
SHMT2-216ENST00000554975 PBX4Q9BYU1 374 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 RPAP3Q9H6T3 665 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-216ENST00000554975 LIMCH1Q9UPQ0 1083 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 SNX14Q9Y5W7 946 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 NAV1Q8NEY1 1877 aa13.04□□□□□ -0.32
SHMT2-216ENST00000554975 A0A1W2PQ45 241 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-216ENST00000554975 A0A1W2PQY0 241 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 BRD1O95696 1058 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 GUCY1A2P33402 732 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 MRPS5P82675 430 aaKnown RBP13.03□□□□□ -0.32
SHMT2-216ENST00000554975 FAAP100Q0VG06 881 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 AKNAD1Q5T1N1 836 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 NAA16Q6N069 864 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-216ENST00000554975 TATDN1Q6P1N9 297 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 C16orf59Q7L2K0 433 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 GAS2L1Q99501 681 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-216ENST00000554975 KIAA1683Q9H0B3 1180 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 GRPEL1Q9HAV7 217 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 CYP46A1Q9Y6A2 500 aa13.03□□□□□ -0.32
SHMT2-216ENST00000554975 IDH1O75874 414 aaKnown RBP13.02□□□□□ -0.33
SHMT2-216ENST00000554975 TAL1P17542 331 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-216ENST00000554975 NCLP19338 710 aaKnown RBP13.02□□□□□ -0.33
SHMT2-216ENST00000554975 ERCC3P19447 782 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 MCTP1Q6DN14 999 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 MAML3Q96JK9 1138 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 ZNF512BQ96KM6 892 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-216ENST00000554975 TTC14Q96N46 770 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 SPATC1LQ9H0A9 340 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 XPNPEP3Q9NQH7 507 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 TMEM39AQ9NV64 488 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 BRWD1Q9NSI6 2320 aa13.02□□□□□ -0.33
SHMT2-216ENST00000554975 TRANK1O15050 2925 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 BAG3O95817 575 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 PLCG2P16885 1265 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 ZNF445P59923 1031 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 KIAA1755Q5JYT7 1200 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 TMEM240Q5SV17 173 aa13.01□□□□□ -0.33
SHMT2-216ENST00000554975 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-216ENST00000554975 UPF3BQ9BZI7 483 aaKnown RBP13.01□□□□□ -0.33
SHMT2-216ENST00000554975 GZF1Q9H116 711 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-216ENST00000554975 PIH1D3Q9NQM4 214 aaKnown RBP13.01□□□□□ -0.33
SHMT2-216ENST00000554975 LRRC37A2A6NM11 1700 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 A0A1W2PRG0 241 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 STRNO43815 780 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 HLA-DOAP06340 250 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 CASTP20810 708 aaKnown RBP13□□□□□ -0.33
SHMT2-216ENST00000554975 USP14P54578 494 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 IRX5P78411 483 aaPredicted RBP13□□□□□ -0.33
SHMT2-216ENST00000554975 TFF2Q03403 129 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 EVX2Q03828 476 aa13□□□□□ -0.33
SHMT2-216ENST00000554975 NMIQ13287 307 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms