RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 USP26Q9BXU7 913 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 STX8Q9UNK0 236 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-214ENST00000554604 FRMPD3Q5JV73 1810 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 SMCHD1A6NHR9 2005 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 EPB41L2O43491 1005 aaKnown RBP14.63□□□□□ -0.07
SHMT2-214ENST00000554604 COPB2P35606 906 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 IKQ13123 557 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-214ENST00000554604 RRP12Q5JTH9 1297 aaKnown RBP14.63□□□□□ -0.07
SHMT2-214ENST00000554604 SLFN13Q68D06 897 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 CWC27Q6UX04 472 aaKnown RBP14.63□□□□□ -0.07
SHMT2-214ENST00000554604 RIOX2Q8IUF8 465 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 HSCBQ8IWL3 235 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 ABRAQ8N0Z2 381 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 ANKLE1Q8NAG6 615 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 GMCL1P1Q8NEA9 526 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 NPLOC4Q8TAT6 608 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 KIFC2Q96AC6 838 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 PAWRQ96IZ0 340 aaKnown RBP14.63□□□□□ -0.07
SHMT2-214ENST00000554604 FLRT1Q9NZU1 646 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 ZMYM6O95789 1325 aa14.63□□□□□ -0.07
SHMT2-214ENST00000554604 LAMA4Q16363 1823 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 ORC4O43929 436 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 ZBED4O75132 1171 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 BMP3P12645 472 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 CNGA1P29973 690 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 CCND3P30281 292 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-214ENST00000554604 CYP2C19P33261 490 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 HAND2P61296 217 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 KCTD2Q14681 263 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 NECAB2Q7Z6G3 386 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 CHMP4CQ96CF2 233 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 MMP19Q99542 508 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 TEX13BQ9BXU2 312 aa14.62□□□□□ -0.07
SHMT2-214ENST00000554604 ZNF214Q9UL59 606 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-214ENST00000554604 TRIOBPQ9H2D6 2365 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 ALPK3Q96L96 1907 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 NMT2O60551 498 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 CHMLP26374 656 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 SLC1A4P43007 532 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 OLFML2BQ68BL8 750 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 SNRNP48Q6IEG0 339 aaKnown RBP14.61□□□□□ -0.07
SHMT2-214ENST00000554604 MFSD6Q6ZSS7 791 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 CPXCR1Q8N123 301 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 ESYT1Q9BSJ8 1104 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 NBPF3Q9H094 633 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 IL17RBQ9NRM6 502 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 OGDHLQ9ULD0 1010 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 NR2E3Q9Y5X4 410 aa14.61□□□□□ -0.07
SHMT2-214ENST00000554604 TMEM232C9JQI7 657 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 H0YGN5 161 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 EVI5O60447 810 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 COBLO75128 1261 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 FGRP09769 529 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 PCP11498 1178 aaKnown RBP14.6□□□□□ -0.07
SHMT2-214ENST00000554604 MCCP23508 829 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 STAT2P52630 851 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 RABEP1Q15276 862 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 AKNAD1Q5T1N1 836 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 REPS2Q8NFH8 660 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 DIS3LQ8TF46 1054 aaKnown RBP14.6□□□□□ -0.07
SHMT2-214ENST00000554604 CHURC1Q8WUH1 139 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 GMCL1Q96IK5 515 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 RNF41Q9H4P4 317 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-214ENST00000554604 MTMR7Q9Y216 660 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 TACC3Q9Y6A5 838 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 MCM3APO60318 1980 aa14.6□□□□□ -0.07
SHMT2-214ENST00000554604 ZNF213O14771 459 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 MSCO60682 206 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 PGK2P07205 417 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 FDX1P10109 184 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 NBR1Q14596 966 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 FAM160B2Q86V87 743 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 SLC38A10Q9HBR0 1119 aa14.59□□□□□ -0.07
SHMT2-214ENST00000554604 RAVER2Q9HCJ3 691 aaKnown RBP14.59□□□□□ -0.07
SHMT2-214ENST00000554604 ATP2A1O14983 1001 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 CCDC96Q2M329 555 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 LHX8Q68G74 356 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 RCSD1Q6JBY9 416 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 KCTD1Q719H9 257 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 STAG1Q8WVM7 1258 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 DDX11Q96FC9 970 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 MAML3Q96JK9 1138 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 C11orf49Q9H6J7 331 aa14.58□□□□□ -0.08
SHMT2-214ENST00000554604 DDX20Q9UHI6 824 aaKnown RBP14.58□□□□□ -0.08
SHMT2-214ENST00000554604 DNAH12Q6ZR08 3092 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 TOP1P11387 765 aaKnown RBP14.57□□□□□ -0.08
SHMT2-214ENST00000554604 CYBAP13498 195 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 OAZ1P54368 228 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 TBC1D10CQ8IV04 446 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 TRPV1Q8NER1 839 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 ESR2Q92731 530 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 DSCC1Q9BVC3 393 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 TCP11L1Q9NUJ3 509 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 FBXO40Q9UH90 709 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 CTNNA3Q9UI47 895 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 RIPK3Q9Y572 518 aa14.57□□□□□ -0.08
SHMT2-214ENST00000554604 NFKBIBQ15653 356 aa14.56□□□□□ -0.08
SHMT2-214ENST00000554604 IMMTQ16891 758 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms