RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 CNPY2Q9Y2B0 182 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 MINDY4BA8MYZ0 360 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 VWA5AO00534 786 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 PQBP1O60828 265 aaKnown RBP10.56□□□□□ -0.72
TDP1-208ENST00000553989 PGK1P00558 417 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 IGHA2P01877 340 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 AKR1A1P14550 325 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 ANP32AP39687 249 aaKnown RBP10.56□□□□□ -0.72
TDP1-208ENST00000553989 C9orf50Q5SZB4 431 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 FAM109BQ6ICB4 259 aaPredicted RBP10.56□□□□□ -0.72
TDP1-208ENST00000553989 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.56□□□□□ -0.72
TDP1-208ENST00000553989 GPATCH3Q96I76 525 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 GUCD1Q96NT3 240 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 SLF1Q9BQI6 1058 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 TINF2Q9BSI4 451 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 PUS7LQ9H0K6 701 aaKnown RBP10.56□□□□□ -0.72
TDP1-208ENST00000553989 NRBP1Q9UHY1 535 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 ISY1Q9ULR0 285 aaKnown RBP10.56□□□□□ -0.72
TDP1-208ENST00000553989 LTBP2Q14767 1821 aa10.56□□□□□ -0.72
TDP1-208ENST00000553989 RLFQ13129 1914 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 TRIM43BA6NCK2 446 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 POTEB2H3BUK9 544 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 SMARCA5O60264 1052 aaPredicted RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 CLTBP09497 229 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 TDO2P48775 406 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 TLE2Q04725 743 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 SNX17Q15036 470 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 SNRNP48Q6IEG0 339 aaKnown RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 SH3RF1Q7Z6J0 888 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 TRIM43Q96BQ3 446 aaPredicted RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 LENG1Q96BZ8 264 aaPredicted RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 DDX11Q96FC9 970 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 RNPC3Q96LT9 517 aaKnown RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 NUP88Q99567 741 aaPredicted RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 ZHX1Q9UKY1 873 aaPredicted RBP10.55□□□□□ -0.72
TDP1-208ENST00000553989 PHF24Q9UPV7 400 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 TACC3Q9Y6A5 838 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 COL6A3P12111 3177 aa10.55□□□□□ -0.72
TDP1-208ENST00000553989 A0A1W2PQ45 241 aaPredicted RBP10.54□□□□□ -0.72
TDP1-208ENST00000553989 A0A1W2PQY0 241 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 APPP05067 770 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 RAG1P15918 1043 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 TAL1P17542 331 aaPredicted RBP10.54□□□□□ -0.72
TDP1-208ENST00000553989 ZNF792Q3KQV3 632 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 C1orf53Q5VUE5 145 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 CPXCR1Q8N123 301 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 KIFC2Q96AC6 838 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 TEX13BQ9BXU2 312 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 ZNF287Q9HBT7 754 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 STARD7Q9NQZ5 370 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 ECHDC1Q9NTX5 307 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 ZNF214Q9UL59 606 aaPredicted RBP10.54□□□□□ -0.72
TDP1-208ENST00000553989 ADAMTS5Q9UNA0 930 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 DIS3Q9Y2L1 958 aaKnown RBP10.54□□□□□ -0.72
TDP1-208ENST00000553989 MYH7P12883 1935 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 COL11A1P12107 1806 aaPredicted RBP10.54□□□□□ -0.72
TDP1-208ENST00000553989 PARP14Q460N5 1801 aa10.54□□□□□ -0.72
TDP1-208ENST00000553989 ZBED4O75132 1171 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 NDUFB10O96000 172 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 ZNF865P0CJ78 1059 aaPredicted RBP10.53□□□□□ -0.72
TDP1-208ENST00000553989 RASA1P20936 1047 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 ZNF444Q8N0Y2 327 aaPredicted RBP10.53□□□□□ -0.72
TDP1-208ENST00000553989 NUP133Q8WUM0 1156 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 APPBP2Q92624 585 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 VTI1AQ96AJ9 217 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 IPO9Q96P70 1041 aaKnown RBP10.53□□□□□ -0.72
TDP1-208ENST00000553989 STRBPQ96SI9 672 aaKnown RBP10.53□□□□□ -0.72
TDP1-208ENST00000553989 CDX2Q99626 313 aaPredicted RBP10.53□□□□□ -0.72
TDP1-208ENST00000553989 TMEM39AQ9NV64 488 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 CLIP2Q9UDT6 1046 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 FAM184BQ9ULE4 1060 aa10.53□□□□□ -0.72
TDP1-208ENST00000553989 ROBO3Q96MS0 1386 aa10.52□□□□□ -0.72
TDP1-208ENST00000553989 DCDC2CA8MYV0 355 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 F5H6K3 240 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 PRDM1O75626 825 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 FOSL2P15408 326 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 SMAD3P84022 425 aaKnown RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 FPGSQ05932 587 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 KLRC3Q07444 240 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 IKQ13123 557 aaPredicted RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 SBK1Q52WX2 424 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 TSHZ3Q63HK5 1081 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 ANKRD35Q8N283 1001 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 MSL3Q8N5Y2 521 aaKnown RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 KBTBD3Q8NAB2 608 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 PRPF38AQ8NAV1 312 aaKnown RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 REPS2Q8NFH8 660 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 MAFAQ8NHW3 353 aaPredicted RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 MYLIPQ8WY64 445 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 COL25A1Q9BXS0 654 aaPredicted RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 SEMA6BQ9H3T3 888 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 SPC25Q9HBM1 224 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 RAVER2Q9HCJ3 691 aaKnown RBP10.52□□□□□ -0.73
TDP1-208ENST00000553989 NYAP2Q9P242 653 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 SYNGAP1Q96PV0 1343 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 SYNRGQ9UMZ2 1314 aa10.52□□□□□ -0.73
TDP1-208ENST00000553989 PLXNA1Q9UIW2 1896 aa10.51□□□□□ -0.73
TDP1-208ENST00000553989 MOXD2PA6NHM9 499 aa10.51□□□□□ -0.73
TDP1-208ENST00000553989 GSG1L2A8MUP6 293 aa10.51□□□□□ -0.73
TDP1-208ENST00000553989 RNF113AO15541 343 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms