RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 COPB2P35606 906 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 TFAP4Q01664 338 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 TLE2Q04725 743 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 LRRFIP1Q32MZ4 808 aaKnown RBP13.67□□□□□ -0.22
NEK3-204ENST00000552973 SLFN13Q68D06 897 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 CCDC129Q6ZRS4 1044 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 FAM161BQ96MY7 647 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 NACAP1Q9BZK3 213 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 NAPBQ9H115 298 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 ZNF287Q9HBT7 754 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 INCENPQ9NQS7 918 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 NRBP1Q9UHY1 535 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 ZHX1Q9UKY1 873 aaPredicted RBP13.67□□□□□ -0.22
NEK3-204ENST00000552973 CNPY2Q9Y2B0 182 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 ROBO3Q96MS0 1386 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 A0A0G2JMZ2 1700 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 TRIM43BA6NCK2 446 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 SNAI1O95863 264 aaPredicted RBP13.66□□□□□ -0.22
NEK3-204ENST00000552973 TTLL1O95922 423 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 AKR1A1P14550 325 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 PPARAQ07869 468 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 SNX17Q15036 470 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 SHHQ15465 462 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 ZMYM1Q5SVZ6 1142 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 C9orf50Q5SZB4 431 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 RNF180Q86T96 592 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 NEDD1Q8NHV4 660 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 MKL1Q969V6 931 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 TRIM43Q96BQ3 446 aaPredicted RBP13.66□□□□□ -0.22
NEK3-204ENST00000552973 PDLIM7Q9NR12 457 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 PHF24Q9UPV7 400 aa13.66□□□□□ -0.22
NEK3-204ENST00000552973 BMP3P12645 472 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 MX1P20591 662 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 IRX5P78411 483 aaPredicted RBP13.65□□□□□ -0.22
NEK3-204ENST00000552973 CTDSPL2Q05D32 466 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 PDE4BQ07343 736 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 ANKRD45Q5TZF3 282 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 PPP4R3CPQ6ZMV5 832 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 ANKRD35Q8N283 1001 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 SLC38A10Q9HBR0 1119 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 HOMER2Q9NSB8 354 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 FEM1BQ9UK73 627 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 MTMR7Q9Y216 660 aa13.65□□□□□ -0.22
NEK3-204ENST00000552973 ZNF236Q9UL36 1845 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 DNAJC25-GNG10A0A024R161 153 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 A0A1W2PQ45 241 aaPredicted RBP13.64□□□□□ -0.23
NEK3-204ENST00000552973 A0A1W2PQY0 241 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 TMEM232C9JQI7 657 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 DLL1O00548 723 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 ATP2A1O14983 1001 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 PQBP1O60828 265 aaKnown RBP13.64□□□□□ -0.23
NEK3-204ENST00000552973 ADAMTS4O75173 837 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 SLC3A2P08195 630 aaKnown RBP13.64□□□□□ -0.23
NEK3-204ENST00000552973 MCCP23508 829 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 ITGB8P26012 769 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 SNAP25P60880 206 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 GMCL1P1Q8NEA9 526 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 CRBNQ96SW2 442 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.64□□□□□ -0.23
NEK3-204ENST00000552973 FAM184BQ9ULE4 1060 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 STXBP5LQ9Y2K9 1186 aa13.64□□□□□ -0.23
NEK3-204ENST00000552973 MYADML2A6NDP7 307 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 FOXP2O15409 715 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 NMT2O60551 498 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 CLTBP09497 229 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 RRP1P56182 461 aaKnown RBP13.63□□□□□ -0.23
NEK3-204ENST00000552973 IKQ13123 557 aaPredicted RBP13.63□□□□□ -0.23
NEK3-204ENST00000552973 ACVR2BQ13705 512 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 VPS53Q5VIR6 699 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 C1orf53Q5VUE5 145 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 MAMDC4Q6UXC1 1216 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 KCTD1Q719H9 257 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 RASGRP2Q7LDG7 609 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 MSL3Q8N5Y2 521 aaKnown RBP13.63□□□□□ -0.23
NEK3-204ENST00000552973 FGD4Q96M96 766 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 AGBL1Q96MI9 1066 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 STARD7Q9NQZ5 370 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 ZBTB47Q9UFB7 747 aaPredicted RBP13.63□□□□□ -0.23
NEK3-204ENST00000552973 STX8Q9UNK0 236 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 TACC3Q9Y6A5 838 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 SYNGAP1Q96PV0 1343 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 SYNRGQ9UMZ2 1314 aa13.63□□□□□ -0.23
NEK3-204ENST00000552973 TSPY2A6NKD2 308 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 SLC1A4P43007 532 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 ACLYP53396 1101 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 KCNA10Q16322 511 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 CCDC174Q6PII3 467 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 KLHDC9Q8NEP7 349 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 CHST13Q8NET6 341 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 STAG1Q8WVM7 1258 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 GUCD1Q96NT3 240 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 IL17RBQ9NRM6 502 aa13.62□□□□□ -0.23
NEK3-204ENST00000552973 ADCY6O43306 1168 aa13.61□□□□□ -0.23
NEK3-204ENST00000552973 RANBP6O60518 1105 aaKnown RBP13.61□□□□□ -0.23
NEK3-204ENST00000552973 C6orf222P0C671 652 aaPredicted RBP13.61□□□□□ -0.23
NEK3-204ENST00000552973 RAG1P15918 1043 aa13.61□□□□□ -0.23
NEK3-204ENST00000552973 STAT2P52630 851 aa13.61□□□□□ -0.23
NEK3-204ENST00000552973 EPHB4P54760 987 aa13.61□□□□□ -0.23
NEK3-204ENST00000552973 CNTN2Q02246 1040 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms