RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 USP17L15C9J2P7 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L13C9JLJ4 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L11C9JVI0 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L18D6R9N7 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L22D6RA61 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L17D6RBQ6 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L19D6RCP7 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L20D6RJB6 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 ATP2A1O14983 1001 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 PLEKHA8P1O95397 391 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 CETPP11597 493 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 APLP1P51693 650 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 HMGCS2P54868 508 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 ATP2B2Q01814 1243 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 SSRP1Q08945 709 aaKnown RBP11.11□□□□□ -0.63
LIMA1-211ENST00000552338 USP17L24Q0WX57 530 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 PFKFB3Q16875 520 aaPredicted RBP11.11□□□□□ -0.63
LIMA1-211ENST00000552338 TTBK2Q6IQ55 1244 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 RASAL3Q86YV0 1011 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 ADGRF4Q8IZF3 695 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 PRPF38AQ8NAV1 312 aaKnown RBP11.11□□□□□ -0.63
LIMA1-211ENST00000552338 WASF1Q92558 559 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 FEZ1Q99689 392 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 RANBP17Q9H2T7 1088 aaKnown RBP11.11□□□□□ -0.63
LIMA1-211ENST00000552338 JMJD4Q9H9V9 463 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 SH3GLB2Q9NR46 395 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 TMOD4Q9NZQ9 345 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 PNMA2Q9UL42 364 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 AGTPBP1Q9UPW5 1226 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 KIF3AQ9Y496 699 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 MANSC4A6NHS7 340 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-211ENST00000552338 TRIM75PA6NK02 468 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 TMEM232C9JQI7 657 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 TRAF1Q13077 416 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 COG2Q14746 738 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 FAM83BQ5T0W9 1011 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 GPAT2Q6NUI2 795 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 KCTD1Q719H9 257 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 RASGRP2Q7LDG7 609 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 ANKRD23Q86SG2 305 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 CCDC144CPQ8IYA2 1237 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 REM2Q8IYK8 340 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-211ENST00000552338 TRIM22Q8IYM9 498 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 HOXC10Q9NYD6 342 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 PPP1R9AQ9ULJ8 1098 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 PRR12Q9ULL5 1215 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 CIZ1Q9ULV3 898 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-211ENST00000552338 SMC3Q9UQE7 1217 aa11.1□□□□□ -0.63
LIMA1-211ENST00000552338 PNMA6FA0A0J9YX94 578 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 ZBTB5O15062 677 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 JAK2O60674 1132 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 GOLGA8HP0CJ92 632 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 PDCP20941 246 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 GJB2P29033 226 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 TM4SF4P48230 202 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 OAZ1P54368 228 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 PABPC4Q13310 644 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 SYDE2Q5VT97 1194 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 RAB11FIP4Q86YS3 637 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 SPICE1Q8N0Z3 855 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 SAMD3Q8N6K7 520 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 MB21D1Q8N884 522 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 REPS2Q8NFH8 660 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 GTF3C2Q8WUA4 911 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 SLF1Q9BQI6 1058 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 UBA5Q9GZZ9 404 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 RPAP3Q9H6T3 665 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 SLC38A10Q9HBR0 1119 aa11.09□□□□□ -0.63
LIMA1-211ENST00000552338 ORC3Q9UBD5 711 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 NAP1L2Q9ULW6 460 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 V9GY48 417 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 FRMPD2Q68DX3 1309 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-211ENST00000552338 ESYT2A0FGR8 921 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 SCG2P13521 617 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 ZNF157P51786 506 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-211ENST00000552338 GHRHRQ02643 423 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 CCDC96Q2M329 555 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 GALNT17Q6IS24 598 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIMA1-211ENST00000552338 FBXO18Q8NFZ0 1043 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 BRI3BPQ8WY22 251 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 PHKBQ93100 1093 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 RRP36Q96EU6 259 aaKnown RBP11.08□□□□□ -0.64
LIMA1-211ENST00000552338 NUP88Q99567 741 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-211ENST00000552338 GPCPD1Q9NPB8 672 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 BARHL2Q9NY43 387 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 THSD7BQ9C0I4 1608 aa11.08□□□□□ -0.64
LIMA1-211ENST00000552338 SPDYE16A6NNV3 312 aaPredicted RBP11.07□□□□□ -0.64
LIMA1-211ENST00000552338 VWA5AO00534 786 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 AKAP17AQ02040 695 aaKnown RBP11.07□□□□□ -0.64
LIMA1-211ENST00000552338 DGKZQ13574 1117 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 ZYXQ15942 572 aaKnown RBP11.07□□□□□ -0.64
LIMA1-211ENST00000552338 DEFB115Q30KQ5 88 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 TREML2Q5T2D2 321 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 PPP1R18Q6NYC8 613 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 CMTR1Q8N1G2 835 aaKnown RBP11.07□□□□□ -0.64
LIMA1-211ENST00000552338 DAGLBQ8NCG7 672 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 PHF20Q9BVI0 1012 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 SLC26A6Q9BXS9 759 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms