RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FAM184BQ9ULE4 1060 aa17.62■□□□□ 0.41
VPS29-209ENST00000551655 SLC4A7Q9Y6M7 1214 aa17.62■□□□□ 0.41
VPS29-209ENST00000551655 ZBBXA8MT70 800 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 PI4K2BG5E9Z4 385 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 SLC25A27O95847 323 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 CA3P07451 260 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 SIAH1Q8IUQ4 282 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 VWCEQ96DN2 955 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 WNT8AQ9H1J5 351 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 HIPK3Q9H422 1215 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 DIS3Q9Y2L1 958 aaKnown RBP17.61■□□□□ 0.41
VPS29-209ENST00000551655 PCDHA11Q9Y5I1 949 aa17.61■□□□□ 0.41
VPS29-209ENST00000551655 COL4A4P53420 1690 aaPredicted RBP17.61■□□□□ 0.41
VPS29-209ENST00000551655 TLR3O15455 904 aaKnown RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 GTPBP6O43824 516 aaPredicted RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 DUSP11O75319 330 aaKnown RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 IDH1O75874 414 aaKnown RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 CST5P28325 142 aaPredicted RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 GABPAQ06546 454 aa17.6■□□□□ 0.41
VPS29-209ENST00000551655 RIOX2Q8IUF8 465 aa17.6■□□□□ 0.41
VPS29-209ENST00000551655 NOB1Q9ULX3 412 aaKnown RBP17.6■□□□□ 0.41
VPS29-209ENST00000551655 COG5Q9UP83 839 aa17.6■□□□□ 0.41
VPS29-209ENST00000551655 PNMA6EA0A0J9YXQ4 647 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 CTAGE5O15320 804 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 BEX3Q00994 111 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 MTX1Q13505 466 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 GNASQ5JWF2 1037 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 SPRED2Q7Z698 418 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 MAGEB6Q8N7X4 407 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 HLA-CQ95604 372 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 SCLYQ96I15 445 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 UIMC1Q96RL1 719 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 MYH8P13535 1937 aa17.59■□□□□ 0.41
VPS29-209ENST00000551655 POLR3DP05423 398 aaPredicted RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 CYP2D6P10635 497 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 ATP2A2P16615 1042 aaKnown RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 POU3F3P20264 500 aaPredicted RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 PTGS1P23219 599 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 STAT3P40763 770 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 NHLH1Q02575 133 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 TTLL4Q14679 1199 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 PCSK9Q8NBP7 692 aaKnown RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 ARNTL2Q8WYA1 636 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 UPF3AQ9H1J1 476 aaKnown RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 ZNF214Q9UL59 606 aaPredicted RBP17.58■□□□□ 0.4
VPS29-209ENST00000551655 ADAMTS5Q9UNA0 930 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 HDAC5Q9UQL6 1122 aa17.58■□□□□ 0.4
VPS29-209ENST00000551655 SCN5AQ14524 2016 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 BRWD1Q9NSI6 2320 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 PRR33A8MZF0 331 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 G3BP1Q13283 466 aaKnown RBP eCLIP17.57■□□□□ 0.4
VPS29-209ENST00000551655 CCDC144BQ3MJ40 725 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 ALDH1L2Q3SY69 923 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 TNNI3KQ59H18 835 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 CCDC158Q5M9N0 1113 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 NOC4LQ9BVI4 516 aaKnown RBP17.57■□□□□ 0.4
VPS29-209ENST00000551655 TRPV6Q9H1D0 765 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 VCPKMTQ9H867 229 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 TLR7Q9NYK1 1049 aaKnown RBP17.57■□□□□ 0.4
VPS29-209ENST00000551655 FPGT-TNNI3KV9GXZ4 949 aa17.57■□□□□ 0.4
VPS29-209ENST00000551655 VWA5AO00534 786 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 AKR1B1P15121 316 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 GJA9P57773 515 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 ACVR2BQ13705 512 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 TMEM67Q5HYA8 995 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 CXCL17Q6UXB2 119 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 FAM9BQ8IZU0 186 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 REPS2Q8NFH8 660 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 DYNLL2Q96FJ2 89 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 ANTXR1Q9H6X2 564 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.56■□□□□ 0.4
VPS29-209ENST00000551655 TMX2Q9Y320 296 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 RIPK3Q9Y572 518 aa17.56■□□□□ 0.4
VPS29-209ENST00000551655 GRIN2DO15399 1336 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 WDR46O15213 610 aaKnown RBP17.55■□□□□ 0.4
VPS29-209ENST00000551655 ICA1Q05084 483 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 GRB10Q13322 594 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 TMEM179Q6ZVK1 233 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 ANKS1AQ92625 1134 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 FGD4Q96M96 766 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 FBXL18Q96ME1 805 aa17.55■□□□□ 0.4
VPS29-209ENST00000551655 RIOK1Q9BRS2 568 aaKnown RBP17.55■□□□□ 0.4
VPS29-209ENST00000551655 ASTN1O14525 1302 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 B4GALT4O60513 344 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 SLC4A3P48751 1232 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 TAP1Q03518 808 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 MAMDC4Q6UXC1 1216 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 SLC43A3Q8NBI5 491 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 SPC25Q9HBM1 224 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 ARHGEF10LQ9HCE6 1279 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 MCM9Q9NXL9 1143 aa17.54■□□□□ 0.4
VPS29-209ENST00000551655 DNAJC25-GNG10A0A024R161 153 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 RAD21O60216 631 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 PSMC6P62333 389 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 C1QBPQ07021 282 aaKnown RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 DEFB128Q7Z7B8 93 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 MSL3Q8N5Y2 521 aaKnown RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 DDX11Q96FC9 970 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 AGBL1Q96MI9 1066 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms