RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RARBP10826 455 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 SLC1A4P43007 532 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 STAT2P52630 851 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 FAM47AQ5JRC9 791 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 ZNF467Q7Z7K2 595 aaPredicted RBP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 KIFC2Q96AC6 838 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 GMCL1Q96IK5 515 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 YTHDC1Q96MU7 727 aaKnown RBP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 NUP88Q99567 741 aaPredicted RBP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 SLC38A10Q9HBR0 1119 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 PRKAG2Q9UGJ0 569 aa12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 BAZ2AQ9UIF9 1905 aaKnown RBP12.89□□□□□ -0.35
VTI1BP3-201ENST00000550220 MYH7P12883 1935 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 TRIM6-TRIM34B2RNG4 842 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 PGK2P07205 417 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 FGRP09769 529 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 LRRC26Q2I0M4 334 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 RNF180Q86T96 592 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 CHD1LQ86WJ1 897 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 CPXCR1Q8N123 301 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 STAG1Q8WVM7 1258 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 OSBPL3Q9H4L5 887 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 ZMYND8Q9ULU4 1186 aaPredicted RBP12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 STX8Q9UNK0 236 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 SYNGAP1Q96PV0 1343 aa12.88□□□□□ -0.35
VTI1BP3-201ENST00000550220 TMEM232C9JQI7 657 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 RANBP6O60518 1105 aaKnown RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 AKR1A1P14550 325 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 IKQ13123 557 aaPredicted RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 MAPK8IP2Q13387 824 aaPredicted RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 TKFCQ3LXA3 575 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 PRAMEF19Q5SWL8 479 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 GJC2Q5T442 439 aaPredicted RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 C1orf53Q5VUE5 145 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 RCSD1Q6JBY9 416 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 GPR153Q6NV75 609 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 MAMDC4Q6UXC1 1216 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 CCDC129Q6ZRS4 1044 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 LRRC47Q8N1G4 583 aaKnown RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 ANKRD35Q8N283 1001 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 LBHD1Q9BQE6 289 aaPredicted RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 LNPKQ9C0E8 428 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 TCP11L1Q9NUJ3 509 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 ISY1Q9ULR0 285 aaKnown RBP12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 ZMYM6O95789 1325 aa12.87□□□□□ -0.35
VTI1BP3-201ENST00000550220 ZNF236Q9UL36 1845 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 DNAJC25-GNG10A0A024R161 153 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 HIP1O00291 1037 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 FGAP02671 866 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 HSPD1P10809 573 aaKnown RBP12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 SYN1P17600 705 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 MAGEA10P43363 369 aaPredicted RBP12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 NOVP48745 357 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 NUCB1Q02818 461 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 CTDSPL2Q05D32 466 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 SLC39A5Q6ZMH5 540 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 RILPL2Q969X0 211 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 UBE2OQ9C0C9 1292 aaKnown RBP12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 RNF41Q9H4P4 317 aaPredicted RBP12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 RAVER2Q9HCJ3 691 aaKnown RBP12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 XPNPEP3Q9NQH7 507 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 PNMA2Q9UL42 364 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 FAM184BQ9ULE4 1060 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 RIPK3Q9Y572 518 aa12.86□□□□□ -0.35
VTI1BP3-201ENST00000550220 FOXP2O15409 715 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 MYCNP04198 464 aaPredicted RBP12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 MCCP23508 829 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 SLC4A3P48751 1232 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 LRRC41Q15345 812 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 LRIT3Q3SXY7 679 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 VPS53Q5VIR6 699 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 B4GALNT3Q6L9W6 998 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 MFSD6Q6ZSS7 791 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 TDHQ8IZJ6 230 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 DCAF4Q8WV16 495 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 FAM227BQ96M60 508 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 TTC14Q96N46 770 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 TSEN34Q9BSV6 310 aaKnown RBP12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 ABHD16BQ9H3Z7 469 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 ACAD9Q9H845 621 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 SPC25Q9HBM1 224 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 IL17RBQ9NRM6 502 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 TOMM22Q9NS69 142 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 PHF24Q9UPV7 400 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 MYH8P13535 1937 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 RLFQ13129 1914 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 CCDC171Q6TFL3 1326 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 A0A0G2JMZ2 1700 aa12.85□□□□□ -0.35
VTI1BP3-201ENST00000550220 ZNF865P0CJ78 1059 aaPredicted RBP12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 TOP1P11387 765 aaKnown RBP12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 SDSP20132 328 aa12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 ATN1P54259 1190 aaPredicted RBP12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 NMIQ13287 307 aaPredicted RBP12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 SNX17Q15036 470 aa12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 CCDC178Q5BJE1 867 aa12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 PLEKHM2Q8IWE5 1019 aa12.84□□□□□ -0.35
VTI1BP3-201ENST00000550220 A0A0D9SFI3 127 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 ASB14A6NK59 587 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms