RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TXNRD3Q86VQ6 643 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 CCDC155Q8N6L0 562 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 FBXO18Q8NFZ0 1043 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 ANKS1AQ92625 1134 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 SLC10A4Q96EP9 437 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 C8orf76Q96K31 380 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 RTFDC1Q9BY42 306 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 TCP11L1Q9NUJ3 509 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 ORC3Q9UBD5 711 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 POLLQ9UGP5 575 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 NAP1L2Q9ULW6 460 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 PSME4Q14997 1843 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 NEDD4P46934 1319 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 ECM29Q5VYK3 1845 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 KIF13BQ9NQT8 1826 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 A0A0G2JLW4 131 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 GOLGA6L4A6NEF3 574 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 GOLGA8AA7E2F4 631 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 MINDY4BA8MYZ0 360 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 USP17L12C9JPN9 530 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 USP17L21D6R901 530 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 PRKAB2O43741 272 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 JAK2O60674 1132 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 DEXIO95424 95 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 CTSOP43234 321 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 USP5P45974 858 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 MMP14P50281 582 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 RAB15P59190 212 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 CCT2P78371 535 aaKnown RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 SSRP1Q08945 709 aaKnown RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 RESTQ13127 1097 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 RTN1Q16799 776 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 MFSD14BQ5SR56 506 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 CCDC183Q5T5S1 534 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 SOGA3Q5TF21 947 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 C12orf60Q5U649 245 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 HHIPL2Q6UWX4 724 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 CDC37L1Q7L3B6 337 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 CATIPQ7Z7H3 387 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 DGKHQ86XP1 1220 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 GPT2Q8TD30 523 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF384Q8TF68 577 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 SDR42E1Q8WUS8 393 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 ANP32BQ92688 251 aaKnown RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 SPATA32Q96LK8 384 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 ZSCAN10Q96SZ4 725 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 OCSTAMPQ9BR26 566 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 COL25A1Q9BXS0 654 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 RNF26Q9BY78 433 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF395Q9H8N7 513 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 TOMM22Q9NS69 142 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 AATFQ9NY61 560 aaKnown RBP eCLIP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 RGS17Q9UGC6 210 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 MKRN1Q9UHC7 482 aaKnown RBP7.18□□□□□ -1.26
SYNE1-239ENST00000545694 BRPF3Q9ULD4 1205 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 MYO3BQ8WXR4 1341 aa7.18□□□□□ -1.26
SYNE1-239ENST00000545694 AP1G2O75843 785 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 CAVIN2O95810 425 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 KIF5BP33176 963 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 GNAQP50148 359 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 DYNLL1P63167 89 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 AKAP17AQ02040 695 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 DNM1Q05193 864 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 COL9A3Q14050 684 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 SAFBQ15424 915 aaKnown RBP eCLIP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 SEC23AQ15436 765 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 SKIV2LQ15477 1246 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 NTRK3Q16288 839 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 ZSCAN23Q3MJ62 389 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 INTS6LQ5JSJ4 861 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 RNFT1Q5M7Z0 435 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 IFIT1BQ5T764 474 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 FOXD4L5Q5VV16 416 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 CAVIN1Q6NZI2 390 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 POTEAQ6S8J7 498 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 LRSAM1Q6UWE0 723 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 CHST3Q7LGC8 479 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 C2CD5Q86YS7 1000 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF654Q8IZM8 581 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 KCTD17Q8N5Z5 321 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 JMYQ8N9B5 988 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 FANCBQ8NB91 859 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 KCNG4Q8TDN1 519 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 EPS8L1Q8TE68 723 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 FOXD4L4Q8WXT5 416 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 DDX11Q96FC9 970 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 INSM2Q96T92 566 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 LZTS2Q9BRK4 669 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 GPBP1L1Q9HC44 474 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 TMPRSS4Q9NRS4 437 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 DDX19AQ9NUU7 478 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 MCM9Q9NXL9 1143 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 RCOR1Q9UKL0 485 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 CNPY2Q9Y2B0 182 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 MORC2Q9Y6X9 1032 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 DDX60LQ5H9U9 1706 aaKnown RBP7.17□□□□□ -1.26
SYNE1-239ENST00000545694 SLX4Q8IY92 1834 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 C10orf71Q711Q0 1435 aa7.17□□□□□ -1.26
SYNE1-239ENST00000545694 WTIPA6NIX2 430 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms