RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 DUSP27Q5VZP5 1158 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 GPAT2Q6NUI2 795 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 PRRT2Q7Z6L0 340 aaPredicted RBP5.18□□□□□ -1.58
SNHG1-220ENST00000544550 TDRD7Q8NHU6 1098 aaKnown RBP5.18□□□□□ -1.58
SNHG1-220ENST00000544550 TBC1D22AQ8WUA7 517 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 HPS1Q92902 700 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 UHRF1Q96T88 793 aaPredicted RBP5.18□□□□□ -1.58
SNHG1-220ENST00000544550 ESYT1Q9BSJ8 1104 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 MRIQ9BWK5 157 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 PHAXQ9H814 394 aaKnown RBP5.18□□□□□ -1.58
SNHG1-220ENST00000544550 PICK1Q9NRD5 415 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 SCHIP1Q9P0W5 487 aaPredicted RBP5.18□□□□□ -1.58
SNHG1-220ENST00000544550 ZNF112Q9UJU3 913 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 JAG2Q9Y219 1238 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 ZSWIM8A7E2V4 1837 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 ECM29Q5VYK3 1845 aa5.18□□□□□ -1.58
SNHG1-220ENST00000544550 LAMA3Q16787 3333 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 H7C1W4 665 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 TAF5LO75529 589 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 CSF1RP07333 972 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 GCLCP48506 637 aaPredicted RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 PABPC4Q13310 644 aaKnown RBP eCLIP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 IFIT5Q13325 482 aaKnown RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 FKBP5Q13451 457 aaPredicted RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 LRRC26Q2I0M4 334 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 KSR2Q6VAB6 950 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 GADL1Q6ZQY3 521 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 SND1Q7KZF4 910 aaKnown RBP eCLIP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 MIGA2Q7L4E1 593 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 UBE3BQ7Z3V4 1068 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 STAG2Q8N3U4 1231 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 MEIOBQ8N635 442 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 ANKRD13CQ8N6S4 541 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 FAM151AQ8WW52 585 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 SCG3Q8WXD2 468 aaKnown RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 COL26A1Q96A83 441 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 AGBL1Q96MI9 1066 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 ZDHHC15Q96MV8 337 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 ASB2Q96Q27 587 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 PURBQ96QR8 312 aaKnown RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 TSPAN10Q9H1Z9 355 aaPredicted RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 TTYH1Q9H313 450 aaPredicted RBP5.17□□□□□ -1.58
SNHG1-220ENST00000544550 MYH16Q9H6N6 1097 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 THEGQ9P2T0 379 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 MAP3K2Q9Y2U5 619 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 SUGT1Q9Y2Z0 365 aa5.17□□□□□ -1.58
SNHG1-220ENST00000544550 SPTBN5Q9NRC6 3674 aaKnown RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 NEURL1BA8MQ27 555 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 CDK2AP1O14519 115 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 MSCO60682 206 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 IGKV5-2P06315 115 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 XRCC5P13010 732 aaKnown RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 HIBADHP31937 336 aaKnown RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 SERPINB4P48594 390 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 CACNB3P54284 484 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 MRPS5P82675 430 aaKnown RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 CENPCQ03188 943 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 UBE4AQ14139 1066 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 TAF7LQ5H9L4 462 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 XP32Q5T750 250 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 MAP3K21Q5TCX8 1036 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 CCDC30Q5VVM6 783 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 VPS37DQ86XT2 251 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 SCYL3Q8IZE3 742 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 SOCS4Q8WXH5 440 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 SNX27Q96L92 541 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 GAS2L1Q99501 681 aaPredicted RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 IQSEC3Q9UPP2 1182 aaPredicted RBP5.16□□□□□ -1.58
SNHG1-220ENST00000544550 AGTPBP1Q9UPW5 1226 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 MTMR7Q9Y216 660 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 AFG3L2Q9Y4W6 797 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 ZHX2Q9Y6X8 837 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 ARAP2Q8WZ64 1704 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 UNC80Q8N2C7 3258 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 CUL9Q8IWT3 2517 aa5.16□□□□□ -1.58
SNHG1-220ENST00000544550 PI4KAP2A4QPH2 592 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 SOWAHDA6NJG2 315 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 SNAP23O00161 211 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 FRAT2O75474 233 aaPredicted RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 ZKSCAN1P17029 563 aaPredicted RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 PTPRAP18433 802 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 MFAP1P55081 439 aaKnown RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 RELBQ01201 579 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 CALD1Q05682 793 aaKnown RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 GCKRQ14397 625 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 PDE3AQ14432 1141 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 TLR1Q15399 786 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 SHHQ15465 462 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 CCDC57Q2TAC2 916 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 CWF19L2Q2TBE0 894 aaKnown RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 CAVIN4Q5BKX8 364 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 AKNAD1Q5T1N1 836 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 APOBEC3HQ6NTF7 200 aaKnown RBP5.15□□□□□ -1.59
SNHG1-220ENST00000544550 HHIPL2Q6UWX4 724 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 LDHAL6AQ6ZMR3 332 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 CAPN12Q6ZSI9 719 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 SLC9A9Q8IVB4 645 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 PI4KAP1Q8N8J0 262 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 TRIB2Q92519 343 aa5.15□□□□□ -1.59
SNHG1-220ENST00000544550 SENP6Q9GZR1 1112 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms