RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 IQCB1Q15051 598 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 CCDC84Q86UT8 332 aaPredicted RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 CABP7Q86V35 215 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 GPIHBP1Q8IV16 184 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 ANKRD35Q8N283 1001 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 MYRIPQ8NFW9 859 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 PARD3BQ8TEW8 1205 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 MAPKBP1O60336 1514 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 FRMD3A2A2Y4 597 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 CLTAP09496 248 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 MTX1Q13505 466 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 NME8Q8N427 588 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 TSC1Q92574 1164 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 POLKQ9UBT6 870 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 HYOU1Q9Y4L1 999 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 MAGI3Q5TCQ9 1506 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 TMED1Q13445 227 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 CAPN12Q6ZSI9 719 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 OTUD6AQ7L8S5 288 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 DCLK2Q8N568 766 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 TRIM58Q8NG06 486 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 WWC3Q9ULE0 1092 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 KCNK3O14649 394 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 PPWD1Q96BP3 646 aaKnown RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 MIS12Q9H081 205 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 QTRT2Q9H974 415 aaKnown RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 GJA3Q9Y6H8 435 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 TNNC2P02585 160 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 PYGLP06737 847 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 NOP14P78316 857 aaKnown RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 RNASELQ05823 741 aaKnown RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 POSTNQ15063 836 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 CCDC51Q96ER9 411 aa11.39□□□□□ -0.59
PCDH9-204ENST00000544246 SUCLA2Q9P2R7 463 aaPredicted RBP11.39□□□□□ -0.59
PCDH9-204ENST00000544246 SRGAP2BP0DMP2 458 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ZNF449Q6P9G9 518 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 TMTC3Q6ZXV5 915 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 RAPH1Q70E73 1250 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 EFHD1Q9BUP0 239 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 EIF6P56537 245 aaKnown RBP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 DEPTORQ8TB45 409 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 RUNDC3BQ96NL0 473 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 LLPHQ9BRT6 129 aaKnown RBP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 POLR3CQ9BUI4 534 aaPredicted RBP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 CBX8Q9HC52 389 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 SMYD2Q9NRG4 433 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 PNMA2Q9UL42 364 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ABCA8O94911 1581 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 TRIM37O94972 964 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 POLR2BP30876 1174 aaKnown RBP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ATP6V1E2Q96A05 226 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 HOOK2Q96ED9 719 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 NRBF2Q96F24 287 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 FGD4Q96M96 766 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 JAG2Q9Y219 1238 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ITM2BQ9Y287 266 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ZBBXA8MT70 800 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 B4E1Z4 1266 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 PDE6CP51160 858 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 MAST3O60307 1309 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 VGLL3A8MV65 326 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 ATP1A2P50993 1020 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 IL9RQ01113 521 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 RCN2Q14257 317 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 MCUQ8NE86 351 aa11.38□□□□□ -0.59
PCDH9-204ENST00000544246 V9GY48 417 aaPredicted RBP11.38□□□□□ -0.59
PCDH9-204ENST00000544246 MAP3K1Q13233 1512 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 STAT1P42224 750 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 BFSP1Q12934 665 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 TRIM42Q8IWZ5 723 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 GDAP1L1Q96MZ0 367 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 IWS1Q96ST2 819 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 BTG4Q9NY30 223 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 RTCBQ9Y3I0 505 aaKnown RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 MAD1L1Q9Y6D9 718 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 N4BP1O75113 896 aaKnown RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 MRPL50Q8N5N7 158 aaKnown RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 SPDYE1Q8NFV5 336 aaPredicted RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 KLHDC4Q8TBB5 520 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 FBXO41Q8TF61 875 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 LZTS2Q9BRK4 669 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 IRAK4Q9NWZ3 460 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 KDM3AQ9Y4C1 1321 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 SUN1O94901 812 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 NPR1P16066 1061 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 ABCB4P21439 1286 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 EEF1B2P24534 225 aaKnown RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 C2CD5Q86YS7 1000 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 RNF217Q8TC41 542 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 DPH5Q9H2P9 285 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 FAM207AQ9NSI2 230 aaPredicted RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 CCPG1Q9ULG6 757 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 PSDA5PKW4 1024 aaPredicted RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 ARHGDIAP52565 204 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 CWF19L2Q2TBE0 894 aaKnown RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 PPP1R12AO14974 1030 aaPredicted RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 TRPA1O75762 1119 aa11.37□□□□□ -0.59
PCDH9-204ENST00000544246 XPAP23025 273 aaPredicted RBP11.37□□□□□ -0.59
PCDH9-204ENST00000544246 SNX1Q13596 522 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms