RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 HSPA8P11142 646 aaKnown RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 MMP14P50281 582 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 RPS8P62241 208 aaKnown RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CDC37Q16543 378 aaPredicted RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CPLX4Q7Z7G2 160 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 XAGE3Q8WTP9 111 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CCDC114Q96M63 670 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 IFT122Q9HBG6 1241 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 GOLGA8CPA6NN73 597 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 F6X3S4 739 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ATP5JP18859 108 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 TNFAIP3P21580 790 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 SYNE4Q8N205 404 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ANKRD35Q8N283 1001 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 SELENOSQ9BQE4 189 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ZNF341Q9BYN7 854 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ATG3Q9NT62 314 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CPSF2Q9P2I0 782 aaKnown RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ARHGEF40Q8TER5 1519 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 DLC1Q96QB1 1528 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 PLA2R1Q13018 1463 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 SPATA31A3Q5VYP0 1347 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 PRPF4BQ13523 1007 aaKnown RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 DHX58Q96C10 678 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 PLEKHG3A1L390 1219 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 EYA2O00167 538 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 SGSM2O43147 1006 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CETPP11597 493 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 IDEP14735 1019 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CCDC122Q5T0U0 273 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 IFNKQ9P0W0 207 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 MADDQ8WXG6 1647 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ADCY7P51828 1080 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 FANCCQ00597 558 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ADALQ6DHV7 355 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 CCDC62Q6P9F0 684 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 HAUS1Q96CS2 278 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 MEIS3Q99687 375 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 TACO1Q9BSH4 297 aaKnown RBP8.63□□□□□ -1.03
VPS13D-211ENST00000543710 TXNDC16Q9P2K2 825 aa8.63□□□□□ -1.03
VPS13D-211ENST00000543710 ERCC6L2Q5T890 1561 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 MANSC4A6NHS7 340 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 I3L4J1 428 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 CHL1O00533 1208 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 PFKFB2O60825 505 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 FKTNO75072 461 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 SFMBT2Q5VUG0 894 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 UBE3BQ7Z3V4 1068 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 IGSF22Q8N9C0 903 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 TSC1Q92574 1164 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 RSPH14Q9UHP6 348 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 KCNH3Q9ULD8 1083 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 PCDHB15Q9Y5E8 787 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 MRVI1Q9Y6F6 885 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 HSPA6P17066 643 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 TMOD1P28289 359 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 LONP1P36776 959 aaKnown RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 BCAMP50895 628 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 SARNPP82979 210 aaKnown RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 PDE4DQ08499 809 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ALCAMQ13740 583 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 MTHFSDQ2M296 383 aaKnown RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 NBPF9Q3BBW0 867 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 HELBQ8NG08 1087 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 OSBPL3Q9H4L5 887 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ZHX1Q9UKY1 873 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ODF2LQ9ULJ1 636 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ERVK-7P63135 1459 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 IKBKBO14920 756 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 CASQ2O14958 399 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ZSCAN20P17040 1043 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 LTKP29376 864 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 RCAN1P53805 252 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 INHBEP58166 350 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 POSTNQ15063 836 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 SLC9C2Q5TAH2 1124 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 LPIN2Q92539 896 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 AK8Q96MA6 479 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ZNF830Q96NB3 372 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ATP6V0A2Q9Y487 856 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 HYOU1Q9Y4L1 999 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 USP32Q8NFA0 1604 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 PLEKHG2Q9H7P9 1386 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 ZWINTO95229 277 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 RPS12P25398 132 aaKnown RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 STRN3Q13033 797 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 METTL14Q9HCE5 456 aaKnown RBP8.62□□□□□ -1.03
VPS13D-211ENST00000543710 AAASQ9NRG9 546 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 FAM169AQ9Y6X4 670 aa8.62□□□□□ -1.03
VPS13D-211ENST00000543710 CETN3O15182 167 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 MARCKSP29966 332 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-211ENST00000543710 GUCY1B3Q02153 619 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 SNAPC2Q13487 334 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 TTC38Q5R3I4 469 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 ATP8A2Q9NTI2 1148 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 USP17L3A6NCW0 530 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 USP17L4A6NCW7 530 aa8.61□□□□□ -1.03
VPS13D-211ENST00000543710 TMEM88BA6NKF7 163 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms