RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	KIF23	Q02241	960 aa	Predicted RBP	32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	FUT2	Q10981	343 aa		32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	NOG	Q13253	232 aa		32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	TMTC3	Q6ZXV5	915 aa		32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	ALG1	Q9BT22	464 aa		32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	VCPKMT	Q9H867	229 aa		32.16	■■■□□ 2.74
CCM2-218	ENST00000541586	AIFM3	Q96NN9	605 aa		32.15	■■■□□ 2.74
CCM2-218	ENST00000541586	PCNT	O95613	3336 aa		32.15	■■■□□ 2.74
CCM2-218	ENST00000541586	MANSC4	A6NHS7	340 aa	Predicted RBP	32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	KIF5B	P33176	963 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	SH3D19	Q5HYK7	790 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	FBXO18	Q8NFZ0	1043 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	ISY1	Q9ULR0	285 aa	Known RBP	32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	MYH4	Q9Y623	1939 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	REST	Q13127	1097 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	SLFN13	Q68D06	897 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	OTUD7B	Q6GQQ9	843 aa		32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	FASTKD5	Q7L8L6	764 aa	Known RBP	32.14	■■■□□ 2.74
CCM2-218	ENST00000541586	NDUFB10	O96000	172 aa		32.13	■■■□□ 2.73
CCM2-218	ENST00000541586	GRM4	Q14833	912 aa		32.13	■■■□□ 2.73
CCM2-218	ENST00000541586	BRI3BP	Q8WY22	251 aa		32.13	■■■□□ 2.73
CCM2-218	ENST00000541586	RNF26	Q9BY78	433 aa	Predicted RBP	32.13	■■■□□ 2.73
CCM2-218	ENST00000541586	GJB4	Q9NTQ9	266 aa		32.13	■■■□□ 2.73
CCM2-218	ENST00000541586	SRBD1	Q8N5C6	995 aa	Known RBP	32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	RGS22	Q8NE09	1264 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	WASF1	Q92558	559 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	NUP88	Q99567	741 aa	Predicted RBP	32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	CEP350	Q5VT06	3117 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	DEXI	O95424	95 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	TREML2	Q5T2D2	321 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	RASGRP2	Q7LDG7	609 aa		32.12	■■■□□ 2.73
CCM2-218	ENST00000541586	PTMS	P20962	102 aa		32.11	■■■□□ 2.73
CCM2-218	ENST00000541586	GMCL1P1	Q8NEA9	526 aa		32.11	■■■□□ 2.73
CCM2-218	ENST00000541586	MAD2L2	Q9UI95	211 aa		32.11	■■■□□ 2.73
CCM2-218	ENST00000541586	VCAM1	P19320	739 aa		32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	SLC1A4	P43007	532 aa		32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	DNM1	Q05193	864 aa	Known RBP	32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	MOGS	Q13724	837 aa		32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	PROCA1	Q8NCQ7	364 aa	Predicted RBP	32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	LPAR1	Q92633	364 aa		32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	PTPN18	Q99952	460 aa		32.1	■■■□□ 2.73
CCM2-218	ENST00000541586	PRPF3	O43395	683 aa	Known RBP	32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	FAM173B	Q6P4H8	233 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	STAG2	Q8N3U4	1231 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	LMBRD1	Q9NUN5	540 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	SYNPO2	Q9UMS6	1093 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	CNTNAP5	Q8WYK1	1306 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	BTBD19	C9JJ37	291 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	INHBE	P58166	350 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	AKAP17A	Q02040	695 aa	Known RBP	32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	SREBF2	Q12772	1141 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	FAM83B	Q5T0W9	1011 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	SAMD1	Q6SPF0	538 aa	Predicted RBP	32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	C12orf42	Q96LP6	360 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	RPAP3	Q9H6T3	665 aa	Predicted RBP	32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	CNPY2	Q9Y2B0	182 aa		32.09	■■■□□ 2.73
CCM2-218	ENST00000541586	PRPF40A	O75400	957 aa	Known RBP	32.08	■■■□□ 2.73
CCM2-218	ENST00000541586	KCTD1	Q719H9	257 aa		32.08	■■■□□ 2.73
CCM2-218	ENST00000541586		V9GY48	417 aa	Predicted RBP	32.08	■■■□□ 2.73
CCM2-218	ENST00000541586	TCHH	Q07283	1943 aa		32.08	■■■□□ 2.73
CCM2-218	ENST00000541586	PALM3	A6NDB9	673 aa	Predicted RBP	32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	GNAQ	P50148	359 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	CCDC96	Q2M329	555 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	KRT40	Q6A162	431 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	GPAT2	Q6NUI2	795 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	TANGO6	Q9C0B7	1094 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	AGTPBP1	Q9UPW5	1226 aa		32.07	■■■□□ 2.72
CCM2-218	ENST00000541586	TESPA1	A2RU30	521 aa	Predicted RBP	32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	PDHB	P11177	359 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	MAP2K2	P36507	400 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	TRIM29	Q14134	588 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	PKN1	Q16512	942 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	FAM43A	Q8N2R8	423 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	GDPD2	Q9HCC8	539 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	FRMPD2	Q68DX3	1309 aa	Predicted RBP	32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	PTPRF	P10586	1907 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	BMP3	P12645	472 aa		32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	NCL	P19338	710 aa	Known RBP	32.06	■■■□□ 2.72
CCM2-218	ENST00000541586	MYH6	P13533	1939 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	hCG_1642624	A0A1W2PR95	340 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	PDHX	O00330	501 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	IGF2BP3	O00425	579 aa	Known RBP eCLIP	32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	WDR46	O15213	610 aa	Known RBP	32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	GOLGA8H	P0CJ92	632 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	TM4SF4	P48230	202 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	IFNL1	Q8IU54	200 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	GPCPD1	Q9NPB8	672 aa		32.05	■■■□□ 2.72
CCM2-218	ENST00000541586	TRAK2	O60296	914 aa		32.04	■■■□□ 2.72
CCM2-218	ENST00000541586	PARP1	P09874	1014 aa	Known RBP	32.04	■■■□□ 2.72
CCM2-218	ENST00000541586	IK	Q13123	557 aa	Predicted RBP	32.04	■■■□□ 2.72
CCM2-218	ENST00000541586	DCAF4	Q8WV16	495 aa		32.04	■■■□□ 2.72
CCM2-218	ENST00000541586	GMCL1	Q96IK5	515 aa		32.04	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L15	C9J2P7	530 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L13	C9JLJ4	530 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	TMEM232	C9JQI7	657 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L11	C9JVI0	530 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L18	D6R9N7	530 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L22	D6RA61	530 aa		32.03	■■■□□ 2.72
CCM2-218	ENST00000541586	USP17L17	D6RBQ6	530 aa		32.03	■■■□□ 2.72

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