RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 DOK7Q18PE1 504 aa15.67■□□□□ 0.1
RTN3-210ENST00000540798 APOBEC3HQ6NTF7 200 aaKnown RBP15.67■□□□□ 0.1
RTN3-210ENST00000540798 CCDC150Q8NCX0 1101 aa15.67■□□□□ 0.1
RTN3-210ENST00000540798 GSDMAQ96QA5 445 aa15.67■□□□□ 0.1
RTN3-210ENST00000540798 MXD3Q9BW11 206 aa15.67■□□□□ 0.1
RTN3-210ENST00000540798 MYH4Q9Y623 1939 aa15.67■□□□□ 0.1
RTN3-210ENST00000540798 GTF2F1P35269 517 aaKnown RBP eCLIP15.66■□□□□ 0.13e-7■■■■■ 29.2
RTN3-210ENST00000540798 DNTTIP2Q5QJE6 756 aaKnown RBP15.66■□□□□ 0.1
RTN3-210ENST00000540798 HEATR3Q7Z4Q2 680 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 PODNQ7Z5L7 613 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 DPF2Q92785 391 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 UQCRHLA0A096LP55 91 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 UQCRHP07919 91 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 CDC42EP5Q6NZY7 148 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 ARMCX5Q6P1M9 558 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 USP17L2Q6R6M4 530 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 RASGRP4Q8TDF6 673 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 USP40Q9NVE5 1235 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 PSME4Q14997 1843 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 SOCS7O14512 581 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 PDHBP11177 359 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 SKILP12757 684 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 TMC6Q7Z403 805 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 PLCD3Q8N3E9 789 aa15.66■□□□□ 0.1
RTN3-210ENST00000540798 CCDC194A0A1B0GVG4 234 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 ESYT2A0FGR8 921 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 hCG_1984214I3L0E3 225 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 LAD1O00515 517 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 KCNJ6P48051 423 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 PICALMQ13492 652 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 CUL4BQ13620 913 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 ZNF713Q8N859 430 aaPredicted RBP15.65■□□□□ 0.1
RTN3-210ENST00000540798 IQUBQ8NA54 791 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 CCDC12Q8WUD4 166 aaPredicted RBP15.65■□□□□ 0.1
RTN3-210ENST00000540798 EHD4Q9H223 541 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 USP17L5A8MUK1 530 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 AKR1B1P15121 316 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 SHMT1P34896 483 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 PRPHP41219 470 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 UBASH3AP57075 661 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 VSTM4Q8IW00 320 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 TEKT1Q969V4 418 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 RRP36Q96EU6 259 aaKnown RBP15.65■□□□□ 0.1
RTN3-210ENST00000540798 ZDHHC15Q96MV8 337 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 INTS13Q9NVM9 706 aa15.65■□□□□ 0.1
RTN3-210ENST00000540798 F8W031 263 aaPredicted RBP15.64■□□□□ 0.09
RTN3-210ENST00000540798 MTRQ99707 1265 aa15.64■□□□□ 0.09
RTN3-210ENST00000540798 SERPINB13Q9UIV8 391 aa15.64■□□□□ 0.09
RTN3-210ENST00000540798 VGLL3A8MV65 326 aa15.64■□□□□ 0.09
RTN3-210ENST00000540798 ASPRV1Q53RT3 343 aa15.64■□□□□ 0.09
RTN3-210ENST00000540798 CPVLQ9H3G5 476 aa15.64■□□□□ 0.09
RTN3-210ENST00000540798 DYNC1I1O14576 645 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 HDLBPQ00341 1268 aaKnown RBP15.63■□□□□ 0.09
RTN3-210ENST00000540798 KRT25Q7Z3Z0 450 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 C2CD5Q86YS7 1000 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 NFE2L3Q9Y4A8 694 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 CD44P16070 742 aaKnown RBP15.63■□□□□ 0.09
RTN3-210ENST00000540798 AFMP43652 599 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 CRKP46108 304 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 SCNN1DP51172 638 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 STRIP1Q5VSL9 837 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 TMX4Q9H1E5 349 aaPredicted RBP15.63■□□□□ 0.09
RTN3-210ENST00000540798 TMEM60Q9H2L4 133 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 PPP1R3GB7ZBB8 358 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 SERPINC1P01008 464 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 NAPAP54920 295 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 INF2Q27J81 1249 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 DACT2Q5SW24 774 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 C7orf43Q8WVR3 580 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 PIGSQ96S52 555 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 C6orf50Q9HD87 102 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 MTMR7Q9Y216 660 aa15.63■□□□□ 0.09
RTN3-210ENST00000540798 ARFGEF1Q9Y6D6 1849 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 GTPBP6O43824 516 aaPredicted RBP15.62■□□□□ 0.09
RTN3-210ENST00000540798 GNA11P29992 359 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 ORC2Q13416 577 aaPredicted RBP15.62■□□□□ 0.09
RTN3-210ENST00000540798 MSL1Q68DK7 614 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 NYAP1Q6ZVC0 841 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 TMX1Q9H3N1 280 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 NPM3O75607 178 aaKnown RBP15.62■□□□□ 0.09
RTN3-210ENST00000540798 TTLL1O95922 423 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 CASP1P29466 404 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 TBX2Q13207 712 aaPredicted RBP15.62■□□□□ 0.09
RTN3-210ENST00000540798 CCSER1Q9C0I3 900 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 KCNQ5Q9NR82 932 aa15.62■□□□□ 0.09
RTN3-210ENST00000540798 SEC63Q9UGP8 760 aaKnown RBP15.62■□□□□ 0.09
RTN3-210ENST00000540798 SMCO2A6NFE2 343 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 RXRBP28702 533 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 DTHD1Q6ZMT9 781 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 ZNF622Q969S3 477 aaKnown RBP eCLIP15.61■□□□□ 0.093e-7■■■■□ 19.7
RTN3-210ENST00000540798 H0YIN7 160 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 NFIAQ12857 509 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 APTXQ7Z2E3 356 aaKnown RBP15.61■□□□□ 0.09
RTN3-210ENST00000540798 CCAR2Q8N163 923 aaKnown RBP15.61■□□□□ 0.09
RTN3-210ENST00000540798 IDI2Q9BXS1 227 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 DBNDD1Q9H9R9 158 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 DISC1Q9NRI5 854 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 USP27XA6NNY8 438 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 TMEM232C9JQI7 657 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 SFPQP23246 707 aaKnown RBP eCLIP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms