RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRAF1Q13077 416 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 CCDC17Q96LX7 622 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 TAB2Q9NYJ8 693 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 HDAC9Q9UKV0 1011 aa12.12□□□□□ -0.47
CLIP1-213ENST00000540338 SMIM22K7EJ46 135 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 TRIM14Q14142 442 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 MORC3Q14149 939 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 PKN1Q16512 942 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CNNM4Q6P4Q7 775 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 AK8Q96MA6 479 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CSGALNACT2Q8N6G5 542 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CEP95Q96GE4 821 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 BARHL2Q9NY43 387 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 LUC7L2Q9Y383 392 aaKnown RBP12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CRYBG1Q9Y4K1 1723 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 GPR75-ASB3A0A0A6YYF3 556 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 hCG_1984214I3L0E3 225 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 MMP10P09238 476 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 HSPA1LP34931 641 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 SPA17Q15506 151 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 ZNF713Q8N859 430 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-213ENST00000540338 ERMNQ8TAM6 284 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CAGE1Q8TC20 777 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 NOC3LQ8WTT2 800 aaKnown RBP12.11□□□□□ -0.47
CLIP1-213ENST00000540338 CPVLQ9H3G5 476 aa12.11□□□□□ -0.47
CLIP1-213ENST00000540338 H7C1D1 291 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 RASA1P20936 1047 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CASP1P29466 404 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 GPATCH4Q5T3I0 446 aaKnown RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 SPDYE3A6NKU9 549 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 STX10O60499 249 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 ETF1P62495 437 aaKnown RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 PTPN21Q16825 1174 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 TEX35Q5T0J7 233 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 TMCO3Q6UWJ1 677 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 PPP1R13BQ96KQ4 1090 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 NAA15Q9BXJ9 866 aaKnown RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CUEDC2Q9H467 287 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 LZTFL1Q9NQ48 299 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 A0A0U1RQG5 324 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 NOM1Q5C9Z4 860 aaKnown RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 ZNF658Q5TYW1 1059 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CACNA2D4Q7Z3S7 1137 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 FCHSD1Q86WN1 690 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 TXLNBQ8N3L3 684 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 TBCKQ8TEA7 893 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 SNX29Q8TEQ0 813 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 MASTLQ96GX5 879 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 DBNDD1Q9H9R9 158 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 MAGEF1Q9HAY2 307 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 LUC7LQ9NQ29 371 aaKnown RBP12.1□□□□□ -0.47
CLIP1-213ENST00000540338 FLT1P17948 1338 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 KCNJ18B7U540 433 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CBX1P83916 185 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 KCNJ12Q14500 433 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CCDC40Q4G0X9 1142 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 SUGT1Q9Y2Z0 365 aa12.1□□□□□ -0.47
CLIP1-213ENST00000540338 CERKLQ49MI3 558 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-213ENST00000540338 NKX2-3Q8TAU0 364 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 DISC1Q9NRI5 854 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 USP17L5A8MUK1 530 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 ACTN4O43707 911 aaKnown RBP12.09□□□□□ -0.47
CLIP1-213ENST00000540338 MYL1P05976 194 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 GOLGA8FQ08AF8 430 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 GOLGA8DPQ0D2H9 430 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 TBC1D8BQ0IIM8 1120 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 C16orf86Q6ZW13 317 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 SUPT20HQ8NEM7 779 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 CNKSR1Q969H4 720 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 CCDC51Q96ER9 411 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 SPZ1Q9BXG8 430 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 PSTPIP2Q9H939 334 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 STK32BQ9NY57 414 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 ATP6V0A2Q9Y487 856 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 DAGLAQ9Y4D2 1042 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 RBM26Q5T8P6 1007 aaKnown RBP12.09□□□□□ -0.47
CLIP1-213ENST00000540338 TMTC1Q8IUR5 882 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 CERKQ8TCT0 537 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 PPP2R2CQ9Y2T4 447 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 TACC3Q9Y6A5 838 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 SLIT2O94813 1529 aa12.09□□□□□ -0.47
CLIP1-213ENST00000540338 FAM237AA0A1B0GTK4 181 aa12.08□□□□□ -0.47
CLIP1-213ENST00000540338 TMEM232C9JQI7 657 aa12.08□□□□□ -0.47
CLIP1-213ENST00000540338 KRT9P35527 623 aa12.08□□□□□ -0.47
CLIP1-213ENST00000540338 CYLC1P35663 651 aaPredicted RBP12.08□□□□□ -0.47
CLIP1-213ENST00000540338 COA7Q96BR5 231 aa12.08□□□□□ -0.47
CLIP1-213ENST00000540338 EHMT1Q9H9B1 1298 aa12.08□□□□□ -0.47
CLIP1-213ENST00000540338 AHDC1Q5TGY3 1603 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 CUL4BQ13620 913 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 ARMCX5Q6P1M9 558 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 DPF2Q92785 391 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 PPP1R1BQ9UD71 204 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 RWDD2AQ9UIY3 292 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 NHSL1Q5SYE7 1610 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 CCZ1BP86790 482 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 CCZ1P86791 482 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 COBLO75128 1261 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 FGRP09769 529 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 CYP26C1Q6V0L0 522 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms