RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 REPS2Q8NFH8 660 aa14.03□□□□□ -0.16
CLSTN3-209ENST00000539982 DDX11Q96FC9 970 aa14.03□□□□□ -0.16
CLSTN3-209ENST00000539982 KANSL2Q9H9L4 492 aa14.03□□□□□ -0.16
CLSTN3-209ENST00000539982 SYNGAP1Q96PV0 1343 aa14.03□□□□□ -0.16
CLSTN3-209ENST00000539982 COL11A1P12107 1806 aaPredicted RBP14.02□□□□□ -0.16
CLSTN3-209ENST00000539982 ARVCFO00192 962 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 ADGRE1Q14246 886 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 RAB30Q15771 203 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 CCDC85BQ15834 202 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 C12orf60Q5U649 245 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 PSRC1Q6PGN9 363 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 VTI1AQ96AJ9 217 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 UHRF1Q96T88 793 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 ARMT1Q9H993 441 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 GOPCQ9HD26 462 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 MSRAQ9UJ68 235 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 ZHX1Q9UKY1 873 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 EXOC6BQ9Y2D4 811 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 BDP1A6H8Y1 2624 aa14.02□□□□□ -0.17
CLSTN3-209ENST00000539982 CHD9Q3L8U1 2897 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 DNAJC25-GNG10A0A024R161 153 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 MYADML2A6NDP7 307 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 GOLIM4O00461 696 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 PRKAB2O43741 272 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 ASGR1P07306 291 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 C6orf222P0C671 652 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 ACRP10323 421 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 IGFBP4P22692 258 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 ACVR2BQ13705 512 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 FAM83BQ5T0W9 1011 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 ZNF467Q7Z7K2 595 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 TEX13BQ9BXU2 312 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 SPC25Q9HBM1 224 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 NCOR1O75376 2440 aa14.01□□□□□ -0.17
CLSTN3-209ENST00000539982 MYO9BQ13459 2157 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 A0A0U1RQG5 324 aaPredicted RBP14□□□□□ -0.17
CLSTN3-209ENST00000539982 USP17L12C9JPN9 530 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 USP17L21D6R901 530 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 SMIM22K7EJ46 135 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 TLR3O15455 904 aaKnown RBP14□□□□□ -0.17
CLSTN3-209ENST00000539982 RAD21O60216 631 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 PLA2G5P39877 138 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 GJA9P57773 515 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 IRX5P78411 483 aaPredicted RBP14□□□□□ -0.17
CLSTN3-209ENST00000539982 GNASQ5JWF2 1037 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 CEP85Q6P2H3 762 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 C16orf86Q6ZW13 317 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 FAM126BQ8IXS8 530 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 AMOTL1Q8IY63 956 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 IL27Q8NEV9 243 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 HERVK_113Q902F9 699 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 PPP1R12CQ9BZL4 782 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 UPF3AQ9H1J1 476 aaKnown RBP14□□□□□ -0.17
CLSTN3-209ENST00000539982 ABHD16BQ9H3Z7 469 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 SLC28A3Q9HAS3 691 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 IL1RAPL2Q9NP60 686 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 IL23AQ9NPF7 189 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 RIPK3Q9Y572 518 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 MYH8P13535 1937 aa14□□□□□ -0.17
CLSTN3-209ENST00000539982 CYP2D7A0A087X1C5 515 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 FGBP02675 491 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 CCDC144BQ3MJ40 725 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 HSP90AB4PQ58FF6 505 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 SNRNP48Q6IEG0 339 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 ITPRIPQ8IWB1 547 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 FTSJ3Q8IY81 847 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 PRPF38AQ8NAV1 312 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 RHPN1Q8TCX5 695 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 FAM122AQ96E09 287 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 DNAJC2Q99543 621 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 SLF1Q9BQI6 1058 aa13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 TSPYL2Q9H2G4 693 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 MTIF3Q9H2K0 278 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-209ENST00000539982 APBB1O00213 710 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 ATP2A1O14983 1001 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 ADCY6O43306 1168 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 MBD4O95243 580 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 CD4P01730 458 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 CYP2C18P33260 490 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 ADD2P35612 726 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 NKX3-2P78367 333 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 CLASRPQ8N2M8 674 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 DDRGK1Q96HY6 314 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 NKX2-4Q9H2Z4 354 aa13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 CXXC1Q9P0U4 656 aaPredicted RBP13.98□□□□□ -0.17
CLSTN3-209ENST00000539982 BMP1P13497 986 aa13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 SLC4A3P48751 1232 aa13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 SLFNL1Q499Z3 407 aa13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 CTR9Q6PD62 1173 aa13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 CPXCR1Q8N123 301 aa13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 NUP88Q99567 741 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLSTN3-209ENST00000539982 BAZ2AQ9UIF9 1905 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 F5H6K3 240 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 CTAGE5O15320 804 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 ZBED4O75132 1171 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 IFIT2P09913 472 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms