RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SLC4A8Q2Y0W8 1093 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 SND1Q7KZF4 910 aaKnown RBP eCLIP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 RUFY1Q96T51 708 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 MTRQ99707 1265 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 MST1RQ04912 1400 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 KIF13AQ9H1H9 1805 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 TRHP20396 242 aaPredicted RBP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 IGHMBP2P38935 993 aaKnown RBP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 UBA7P41226 1012 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 KIF5AQ12840 1032 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 SEC23AQ15436 765 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 SPA17Q15506 151 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 IQCEQ6IPM2 695 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 DZIP3Q86Y13 1208 aaKnown RBP12.61□□□□□ -0.39
SYNE1-237ENST00000539504 VIPAS39Q9H9C1 493 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 ZBTB1Q9Y2K1 713 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 KIF1AQ12756 1690 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 CAMTA1Q9Y6Y1 1673 aa12.61□□□□□ -0.39
SYNE1-237ENST00000539504 LGALS16A8MUM7 142 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 RPS6KA5O75582 802 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 FGFR2P21802 821 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CCT5P48643 541 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 RCAN1P53805 252 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 PDXDC2PQ6P474 469 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 PACS2Q86VP3 889 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 PIGBQ92521 554 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 LACRTQ9GZZ8 138 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 DUSP10Q9Y6W6 482 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CORO7P57737 925 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 E2F4Q16254 413 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 TTC19Q6DKK2 380 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CSGALNACT2Q8N6G5 542 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 AGPAT5Q9NUQ2 364 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 JRKLQ9Y4A0 524 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 BAZ2BQ9UIF8 2168 aaKnown RBP12.6□□□□□ -0.39
SYNE1-237ENST00000539504 TNS3Q68CZ2 1445 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 DYNLL1P63167 89 aaKnown RBP12.6□□□□□ -0.39
SYNE1-237ENST00000539504 FAM47AQ5JRC9 791 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC181Q5TID7 509 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 RASGRP4Q8TDF6 673 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 RPGRIP1Q96KN7 1286 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC42Q96M95 316 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 DEF6Q9H4E7 631 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 PNPLA7Q6ZV29 1317 aa12.6□□□□□ -0.39
SYNE1-237ENST00000539504 CALM1P0DP23 149 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 CALM2P0DP24 149 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 CALM3P0DP25 149 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 MYBL2P10244 700 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 NOP2P46087 812 aaKnown RBP12.59□□□□□ -0.39
SYNE1-237ENST00000539504 PMS1P54277 932 aaKnown RBP12.59□□□□□ -0.39
SYNE1-237ENST00000539504 MTA3Q9BTC8 594 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 NHEJ1Q9H9Q4 299 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-237ENST00000539504 PP2D1A8MPX8 630 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 NMT2O60551 498 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 NAP1L1P55209 391 aaKnown RBP12.59□□□□□ -0.39
SYNE1-237ENST00000539504 ICE2Q659A1 982 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 TMTC3Q6ZXV5 915 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 SECISBP2LQ93073 1101 aaKnown RBP12.59□□□□□ -0.39
SYNE1-237ENST00000539504 KAT6BQ8WYB5 2073 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 EBAG9O00559 213 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 SCG2P13521 617 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 KLK7P49862 253 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 LIG3P49916 1009 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 DNM2P50570 870 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC178Q5BJE1 867 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 ADGRA1Q86SQ6 560 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 TUBGCP2Q9BSJ2 902 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 CAPN11Q9UMQ6 739 aa12.59□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC194A0A1B0GVG4 234 aa12.58□□□□□ -0.39
SYNE1-237ENST00000539504 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.39
SYNE1-237ENST00000539504 WDR59Q6PJI9 974 aa12.58□□□□□ -0.39
SYNE1-237ENST00000539504 CCNI2Q6ZMN8 369 aaPredicted RBP12.58□□□□□ -0.39
SYNE1-237ENST00000539504 DTHD1Q6ZMT9 781 aa12.58□□□□□ -0.39
SYNE1-237ENST00000539504 SRBD1Q8N5C6 995 aaKnown RBP12.58□□□□□ -0.39
SYNE1-237ENST00000539504 SMCR8Q8TEV9 937 aaPredicted RBP12.58□□□□□ -0.39
SYNE1-237ENST00000539504 CCDC47Q96A33 483 aaKnown RBP12.58□□□□□ -0.39
SYNE1-237ENST00000539504 KAT14Q9H8E8 782 aa12.58□□□□□ -0.39
SYNE1-237ENST00000539504 EXOC1Q9NV70 894 aa12.58□□□□□ -0.39
SYNE1-237ENST00000539504 TJP1Q07157 1748 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 SHTN1A0MZ66 631 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 USP17L12C9JPN9 530 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 USP17L21D6R901 530 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 PDE2AO00408 941 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 USO1O60763 962 aaKnown RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 VEGFAP15692 232 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 EEF1GP26641 437 aaKnown RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 DNA2P51530 1060 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 IL17AQ16552 155 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 PAPD7Q5XG87 772 aaKnown RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 IRF2BP1Q8IU81 584 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 ADSSL1Q8N142 457 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 GPKOWQ92917 476 aaPredicted RBP eCLIP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 NID2Q14112 1375 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 RCCD1A6NED2 376 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 PRPF6O94906 941 aaKnown RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 SLC7A5Q01650 507 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 FUT2Q10981 343 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 TROAPQ12815 778 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-237ENST00000539504 KRT26Q7Z3Y9 468 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms