RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NEDD4P46934 1319 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 TMEM232C9JQI7 657 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 FARP2O94887 1054 aaPredicted RBP17.47■□□□□ 0.39
USP28-204ENST00000537642 FCER1AP12319 257 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 CAPN2P17655 700 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 CHMLP26374 656 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 SLC1A4P43007 532 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 PRPF38BQ5VTL8 546 aaKnown RBP17.47■□□□□ 0.39
USP28-204ENST00000537642 MFSD14CQ5VZR4 134 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 TEX13BQ9BXU2 312 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 SLC38A10Q9HBR0 1119 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 RAD50Q92878 1312 aa17.47■□□□□ 0.39
USP28-204ENST00000537642 PLXNA1Q9UIW2 1896 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 ATP2A1O14983 1001 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 ZBED4O75132 1171 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 CYP2C19P33261 490 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 COPB2P35606 906 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 STAT2P52630 851 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 SNRNP48Q6IEG0 339 aaKnown RBP17.46■□□□□ 0.39
USP28-204ENST00000537642 KCTD1Q719H9 257 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 CPXCR1Q8N123 301 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 MMP19Q99542 508 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 TMEM47Q9BQJ4 181 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 ISY1Q9ULR0 285 aaKnown RBP17.46■□□□□ 0.39
USP28-204ENST00000537642 RIPK3Q9Y572 518 aa17.46■□□□□ 0.39
USP28-204ENST00000537642 TOP1P11387 765 aaKnown RBP17.45■□□□□ 0.38
USP28-204ENST00000537642 OLFML2BQ68BL8 750 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 RCSD1Q6JBY9 416 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 FAM160B2Q86V87 743 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 CHURC1Q8WUH1 139 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 RAVER2Q9HCJ3 691 aaKnown RBP17.45■□□□□ 0.38
USP28-204ENST00000537642 CTNNA3Q9UI47 895 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 OGDHLQ9ULD0 1010 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 MTMR7Q9Y216 660 aa17.45■□□□□ 0.38
USP28-204ENST00000537642 CTDP1Q9Y5B0 961 aaPredicted RBP17.45■□□□□ 0.38
USP28-204ENST00000537642 FRMPD3Q5JV73 1810 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 PLA2G6O60733 806 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 PGK2P07205 417 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 KCTD2Q14681 263 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 IMMTQ16891 758 aaKnown RBP17.44■□□□□ 0.38
USP28-204ENST00000537642 LHX8Q68G74 356 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 CENPQQ7L2Z9 268 aaPredicted RBP17.44■□□□□ 0.38
USP28-204ENST00000537642 TRPV1Q8NER1 839 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 DIS3LQ8TF46 1054 aaKnown RBP17.44■□□□□ 0.38
USP28-204ENST00000537642 DCAF4Q8WV16 495 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 RUFY2Q8WXA3 655 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 ESR2Q92731 530 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 MAML3Q96JK9 1138 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 SLC5A4Q9NY91 659 aa17.44■□□□□ 0.38
USP28-204ENST00000537642 FDX1P10109 184 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 SLC4A3P48751 1232 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 MNX1P50219 401 aaPredicted RBP17.43■□□□□ 0.38
USP28-204ENST00000537642 OAZ1P54368 228 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 PTH1RQ03431 593 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 IKQ13123 557 aaPredicted RBP17.43■□□□□ 0.38
USP28-204ENST00000537642 SKAP1Q86WV1 359 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 ANKLE1Q8NAG6 615 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 PAWRQ96IZ0 340 aaKnown RBP17.43■□□□□ 0.38
USP28-204ENST00000537642 TTC14Q96N46 770 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 ZKSCAN3Q9BRR0 538 aa17.43■□□□□ 0.38
USP28-204ENST00000537642 B4E1Z4 1266 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 SGSM2O43147 1006 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 KDM4AO75164 1064 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 CYBAP13498 195 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 NT5C2P49902 561 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 CCDC96Q2M329 555 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 ZNF792Q3KQV3 632 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 PRR12Q9ULL5 1215 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 ZNF536O15090 1300 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 SMCHD1A6NHR9 2005 aa17.42■□□□□ 0.38
USP28-204ENST00000537642 ALPK3Q96L96 1907 aa17.41■□□□□ 0.38
USP28-204ENST00000537642 SNAP25P60880 206 aa17.41■□□□□ 0.38
USP28-204ENST00000537642 TTBK2Q6IQ55 1244 aa17.41■□□□□ 0.38
USP28-204ENST00000537642 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.41■□□□□ 0.38
USP28-204ENST00000537642 HTATIP2Q9BUP3 242 aa17.41■□□□□ 0.38
USP28-204ENST00000537642 ZSWIM5Q9P217 1185 aa17.41■□□□□ 0.38
USP28-204ENST00000537642 DIS3Q9Y2L1 958 aaKnown RBP17.41■□□□□ 0.38
USP28-204ENST00000537642 DNAJC25-GNG10A0A024R161 153 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 PDHBP11177 359 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 CNGA1P29973 690 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 PRAMEF19Q5SWL8 479 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 BTNL9Q6UXG8 535 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 NECAB2Q7Z6G3 386 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 IQCA1Q86XH1 822 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 DGKHQ86XP1 1220 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 CHST13Q8NET6 341 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 DPF3Q92784 378 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 AGBL1Q96MI9 1066 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 DDX20Q9UHI6 824 aaKnown RBP17.4■□□□□ 0.38
USP28-204ENST00000537642 FRMPD2Q68DX3 1309 aaPredicted RBP17.4■□□□□ 0.38
USP28-204ENST00000537642 CEP290O15078 2479 aa17.4■□□□□ 0.38
USP28-204ENST00000537642 SNHG28P0DPA3 235 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 SLC16A2P36021 539 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 CCDC178Q5BJE1 867 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 CCDC174Q6PII3 467 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 ANKS1AQ92625 1134 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 DDX11Q96FC9 970 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 TINF2Q9BSI4 451 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 KRT23Q9C075 422 aa17.39■□□□□ 0.37
USP28-204ENST00000537642 CNNM2Q9H8M5 875 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms