RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 XPNPEP3Q9NQH7 507 aa13.44□□□□□ -0.26
CLSTN3-206ENST00000535668 FBXO28Q9NVF7 368 aa13.44□□□□□ -0.26
CLSTN3-206ENST00000535668 RCAN3Q9UKA8 241 aa13.44□□□□□ -0.26
CLSTN3-206ENST00000535668 PRUNE2Q8WUY3 3088 aa13.44□□□□□ -0.26
CLSTN3-206ENST00000535668 F5H6K3 240 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 DUSP11O75319 330 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 SNAI1O95863 264 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 CHGBP05060 677 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 NOVP48745 357 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 TLE2Q04725 743 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 KLRC3Q07444 240 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 SHHQ15465 462 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 TRIM60Q495X7 471 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 DIEXFQ68CQ4 756 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 CHST13Q8NET6 341 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 OSBP2Q969R2 916 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 UPF3AQ9H1J1 476 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 MTMR4Q9NYA4 1195 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 FBXO40Q9UH90 709 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 PLXNA1Q9UIW2 1896 aa13.43□□□□□ -0.26
CLSTN3-206ENST00000535668 TTC41PQ6P2S7 1318 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 RNF113AO15541 343 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 NDUFB10O96000 172 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 CDK7P50613 346 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 PLS1Q14651 629 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 LRRFIP1Q32MZ4 808 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 PRAMEF19Q5SWL8 479 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 FAM83BQ5T0W9 1011 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 SEZ6LQ9BYH1 1024 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 SEMA6BQ9H3T3 888 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 CNPY2Q9Y2B0 182 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 ATP11BQ9Y2G3 1177 aa13.42□□□□□ -0.26
CLSTN3-206ENST00000535668 EYSQ5T1H1 3165 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 A0A1W2PQ45 241 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 A0A1W2PQY0 241 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 PATL2C9JE40 543 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 PGK2P07205 417 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 CLTBP09497 229 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 PPP4R3BQ5MIZ7 849 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 C9orf50Q5SZB4 431 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 RASIP1Q5U651 963 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 NEDD1Q8NHV4 660 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 NUP133Q8WUM0 1156 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 BADQ92934 168 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 FGD4Q96M96 766 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 KATNBL1Q9H079 304 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 ABHD16BQ9H3Z7 469 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 EPB41L4AQ9HCS5 686 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 FEM1BQ9UK73 627 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 TBX21Q9UL17 535 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 FAM184BQ9ULE4 1060 aa13.41□□□□□ -0.26
CLSTN3-206ENST00000535668 TTLL1O95922 423 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 TAL1P17542 331 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 ITGB8P26012 769 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 ACLYP53396 1101 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 GJA9P57773 515 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 ZNF697Q5TEC3 545 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 SH3RF1Q7Z6J0 888 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 GMCL1Q96IK5 515 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 RIPK3Q9Y572 518 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 BDP1A6H8Y1 2624 aa13.4□□□□□ -0.26
CLSTN3-206ENST00000535668 MROH7Q68CQ1 1323 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 SYNRGQ9UMZ2 1314 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 LOC102724159A0A0B4J2E5 919 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 GPAA1O43292 621 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 FGRP09769 529 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 FAAP100Q0VG06 881 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 PWP2Q15269 919 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 SNRNP48Q6IEG0 339 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 FAM133AQ8N9E0 248 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 SLC43A3Q8NBI5 491 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 PCSK9Q8NBP7 692 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 GPATCH3Q96I76 525 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 CDX2Q99626 313 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 MKNK2Q9HBH9 465 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 CHD9Q3L8U1 2897 aa13.39□□□□□ -0.27
CLSTN3-206ENST00000535668 CTAGE5O15320 804 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 ZBED4O75132 1171 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 PGK1P00558 417 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 TIMP1P01033 207 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 ACVR2BQ13705 512 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 TKFCQ3LXA3 575 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 IFNL3Q8IZI9 196 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 PI4K2BQ8TCG2 481 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 MORC4Q8TE76 937 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 CEP95Q96GE4 821 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 TTYH1Q9H313 450 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 Q9Y3F1 56 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 SALL3Q9BXA9 1300 aa13.38□□□□□ -0.27
CLSTN3-206ENST00000535668 DCDC2CA8MYV0 355 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 KCNA10Q16322 511 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 ZMYM1Q5SVZ6 1142 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 C20orf194Q5TEA3 1177 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 ANO1Q5XXA6 986 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 MFSD5Q6N075 450 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 ZNF444Q8N0Y2 327 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 FERMT2Q96AC1 680 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 DDX11Q96FC9 970 aa13.37□□□□□ -0.27
CLSTN3-206ENST00000535668 NACAP1Q9BZK3 213 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms