RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 FAM160B2Q86V87 743 aa15.71■□□□□ 0.11
CLSTN3-205ENST00000535452 TRPV1Q8NER1 839 aa15.71■□□□□ 0.11
CLSTN3-205ENST00000535452 FERMT2Q96AC1 680 aa15.71■□□□□ 0.11
CLSTN3-205ENST00000535452 VTI1AQ96AJ9 217 aa15.71■□□□□ 0.11
CLSTN3-205ENST00000535452 NUP88Q99567 741 aaPredicted RBP15.71■□□□□ 0.11
CLSTN3-205ENST00000535452 M0R2C6 588 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 CHGBP05060 677 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 TFAP4Q01664 338 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 PPARAQ07869 468 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 LRRC41Q15345 812 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 FAM47AQ5JRC9 791 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 CCDC174Q6PII3 467 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 NOL8Q76FK4 1167 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 LRRC47Q8N1G4 583 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 GMCL1P1Q8NEA9 526 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 EVI5LQ96CN4 794 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 CEP95Q96GE4 821 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 MTMR4Q9NYA4 1195 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 ZNF214Q9UL59 606 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 TACC3Q9Y6A5 838 aa15.7■□□□□ 0.1
CLSTN3-205ENST00000535452 SYNGAP1Q96PV0 1343 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 A0A0G2JMZ2 1700 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 DCDC2CA8MYV0 355 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 MFAP1P55081 439 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 ZNF792Q3KQV3 632 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 ZNF697Q5TEC3 545 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 PCSK9Q8NBP7 692 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 NEDD1Q8NHV4 660 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 MKL1Q969V6 931 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 GLT1D1Q96MS3 346 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 ACAD9Q9H845 621 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 RAVER2Q9HCJ3 691 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 STARD7Q9NQZ5 370 aa15.69■□□□□ 0.1
CLSTN3-205ENST00000535452 MROH7Q68CQ1 1323 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 MOXD2PA6NHM9 499 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 TMEM232C9JQI7 657 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 SOX1O00570 391 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 ATP2A1O14983 1001 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 RANBP6O60518 1105 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 CLTBP09497 229 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 RAG1P15918 1043 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 RRP1P56182 461 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 AAMPQ13685 434 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 TRIM60Q495X7 471 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 ZNF467Q7Z7K2 595 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 MPHOSPH6Q99547 160 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 TSEN34Q9BSV6 310 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 ABHD16BQ9H3Z7 469 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 HOMER2Q9NSB8 354 aa15.68■□□□□ 0.1
CLSTN3-205ENST00000535452 POTEB2H3BUK9 544 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 SMIM22K7EJ46 135 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 PQBP1O60828 265 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 PGK1P00558 417 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 CCDC96Q2M329 555 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 TKFCQ3LXA3 575 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 ZMYM1Q5SVZ6 1142 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 C1orf53Q5VUE5 145 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 SLC38A10Q9HBR0 1119 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 EPB41L4AQ9HCS5 686 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 PNMA2Q9UL42 364 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 PHF24Q9UPV7 400 aa15.67■□□□□ 0.1
CLSTN3-205ENST00000535452 ASB14A6NK59 587 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 TRIM6-TRIM34B2RNG4 842 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 TLR3O15455 904 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 ZEB2O60315 1214 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 C6orf222P0C671 652 aaPredicted RBP15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 STAG1Q8WVM7 1258 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 HELLSQ9NRZ9 838 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 TMEM39AQ9NV64 488 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 MTMR7Q9Y216 660 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 ALPK3Q96L96 1907 aa15.66■□□□□ 0.1
CLSTN3-205ENST00000535452 PLIN4Q96Q06 1357 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 DUSP11O75319 330 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 TLE2Q04725 743 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 ACVR2BQ13705 512 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 RRP12Q5JTH9 1297 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 TICAM2Q86XR7 235 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 REPS2Q8NFH8 660 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 PI4K2BQ8TCG2 481 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 BADQ92934 168 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 GMCL1Q96IK5 515 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 SEC62Q99442 399 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 RWDD1Q9H446 243 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 STXBP5LQ9Y2K9 1186 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 PCDHB15Q9Y5E8 787 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 FRMPD3Q5JV73 1810 aa15.65■□□□□ 0.1
CLSTN3-205ENST00000535452 IGKV6D-41A0A0C4DH26 115 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 A0A1W2PQ45 241 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 A0A1W2PQY0 241 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 IGHA2P01877 340 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 ZNF865P0CJ78 1059 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 ALAS1P13196 640 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 MCCP23508 829 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 ACLYP53396 1101 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 SNX17Q15036 470 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 MAMDC4Q6UXC1 1216 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 AP5M1Q9H0R1 490 aa15.64■□□□□ 0.09
CLSTN3-205ENST00000535452 RNF146Q9NTX7 359 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms