RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, human

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-222	ENST00000533733	ZMYND12	Q9H0C1	365 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	C6orf50	Q9HD87	102 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	ADD3	Q9UEY8	706 aa	Known RBP	13.53	□□□□□ -0.24
ATM-222	ENST00000533733	LIMA1	Q9UHB6	759 aa	Known RBP	13.53	□□□□□ -0.24
ATM-222	ENST00000533733	SNED1	Q8TER0	1413 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	KLRG2	A4D1S0	409 aa	Predicted RBP	13.53	□□□□□ -0.24
ATM-222	ENST00000533733	PARP1	P09874	1014 aa	Known RBP	13.53	□□□□□ -0.24
ATM-222	ENST00000533733	PBX1	P40424	430 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	GPSM2	P81274	684 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	PAK1	Q13153	545 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	ZNF827	Q17R98	1081 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	CCDC93	Q567U6	631 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	EYA3	Q99504	573 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	DISC1	Q9NRI5	854 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	SAMSN1	Q9NSI8	373 aa	Known RBP	13.53	□□□□□ -0.24
ATM-222	ENST00000533733	PPP2R2C	Q9Y2T4	447 aa		13.53	□□□□□ -0.24
ATM-222	ENST00000533733	NRXN2	Q9P2S2	1712 aa		13.52	□□□□□ -0.24
ATM-222	ENST00000533733	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733		H7C1D1	291 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	STXBP3	O00186	592 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	SERPINB2	P05120	415 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	STAT6	P42226	847 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	CDK8	P49336	464 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	SYT10	Q6XYQ8	523 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	APTX	Q7Z2E3	356 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	REXO1L1P	Q8IX06	675 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	TRMT44	Q8IYL2	757 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	NOC3L	Q8WTT2	800 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	TSC1	Q92574	1164 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	RRP36	Q96EU6	259 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	SEC63	Q9UGP8	760 aa	Known RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	DNAI1	Q9UI46	699 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	ZNF215	Q9UL58	517 aa	Predicted RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	TRPC5	Q9UL62	973 aa	Predicted RBP	13.52	□□□□□ -0.25
ATM-222	ENST00000533733	PCDHA6	Q9UN73	950 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	PCDHA8	Q9Y5H6	950 aa		13.52	□□□□□ -0.25
ATM-222	ENST00000533733	RPN1	P04843	607 aa	Known RBP	13.51	□□□□□ -0.25
ATM-222	ENST00000533733	GYS1	P13807	737 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	UBA7	P41226	1012 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	TUBB2A	Q13885	445 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	DIXDC1	Q155Q3	683 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	WWC2	Q6AWC2	1192 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	ILDR2	Q71H61	639 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.51	□□□□□ -0.25
ATM-222	ENST00000533733	CCDC24	Q8N4L8	307 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	DYNLL2	Q96FJ2	89 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	MED15	Q96RN5	788 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	TUBB2B	Q9BVA1	445 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	STX8	Q9UNK0	236 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	FLT1	P17948	1338 aa		13.51	□□□□□ -0.25
ATM-222	ENST00000533733	KLRF2	D3W0D1	207 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	WNT7A	O00755	349 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	CCDC175	P0C221	793 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	CD44	P16070	742 aa	Known RBP	13.5	□□□□□ -0.25
ATM-222	ENST00000533733	FECH	P22830	423 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	NONO	Q15233	471 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
ATM-222	ENST00000533733	SOGA3	Q5TF21	947 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	RRAGB	Q5VZM2	374 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	PPP1R18	Q6NYC8	613 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	TRIM65	Q6PJ69	517 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	SMIM5	Q71RC9	77 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	HEATR3	Q7Z4Q2	680 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	AMIGO3	Q86WK7	504 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	MAPKAPK5	Q8IW41	473 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	SP8	Q8IXZ3	490 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	STAG2	Q8N3U4	1231 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	IGSF22	Q8N9C0	903 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	OGFR	Q9NZT2	677 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	SWAP70	Q9UH65	585 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	USP17L3	A6NCW0	530 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	USP17L4	A6NCW7	530 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	NAPA	P54920	295 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	TUBB4B	P68371	445 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	AMPD3	Q01432	767 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	EVX2	Q03828	476 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	ASPRV1	Q53RT3	343 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	MFSD14B	Q5SR56	506 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	USP17L1	Q7RTZ2	530 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	COA1	Q9GZY4	146 aa		13.5	□□□□□ -0.25
ATM-222	ENST00000533733	GREB1L	Q9C091	1923 aa	Predicted RBP	13.49	□□□□□ -0.25
ATM-222	ENST00000533733	CYTH3	O43739	400 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	MFAP3L	O75121	409 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	EEF1G	P26641	437 aa	Known RBP	13.49	□□□□□ -0.25
ATM-222	ENST00000533733	RHBDL3	P58872	404 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	IL17A	Q16552	155 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	NOM1	Q5C9Z4	860 aa	Known RBP	13.49	□□□□□ -0.25
ATM-222	ENST00000533733	MEX3C	Q5U5Q3	659 aa	Known RBP	13.49	□□□□□ -0.25
ATM-222	ENST00000533733	KLHL10	Q6JEL2	608 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	TMTC1	Q8IUR5	882 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	TBC1D16	Q8TBP0	767 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.49	□□□□□ -0.25
ATM-222	ENST00000533733	KBTBD4	Q9NVX7	518 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	CTNND2	Q9UQB3	1225 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	JAG2	Q9Y219	1238 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	ANKRD31	Q8N7Z5	1873 aa		13.49	□□□□□ -0.25
ATM-222	ENST00000533733	EFCAB8	A8MWE9	144 aa		13.48	□□□□□ -0.25
ATM-222	ENST00000533733	RHOBTB3	O94955	611 aa		13.48	□□□□□ -0.25
ATM-222	ENST00000533733	OR52Z1	P0C646	297 aa		13.48	□□□□□ -0.25
ATM-222	ENST00000533733	COBLL1	Q53SF7	1204 aa		13.48	□□□□□ -0.25
ATM-222	ENST00000533733	NEK8	Q86SG6	692 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms