RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZNF765Q7L2R6 523 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 LSRQ86X29 649 aaPredicted RBP6.52□□□□□ -1.37
CD44-236ENST00000533222 MCF2L2Q86YR7 1114 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 KCT2Q8NC54 265 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 SHKBP1Q8TBC3 707 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 SYAP1Q96A49 352 aaPredicted RBP6.52□□□□□ -1.37
CD44-236ENST00000533222 C8orf37Q96NL8 207 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 DUSP23Q9BVJ7 150 aa6.52□□□□□ -1.37
CD44-236ENST00000533222 CNTNAP4Q9C0A0 1308 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 FAM86C2PA6NEL3 165 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 WDR64B1ANS9 1081 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 COPB2P35606 906 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 CAP2P40123 477 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 KIAA2012Q0VF49 1180 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 TRAF1Q13077 416 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 RABEP1Q15276 862 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 TAF7Q15545 349 aaPredicted RBP6.51□□□□□ -1.37
CD44-236ENST00000533222 PRSS36Q5K4E3 855 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 SLC6A19Q695T7 634 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 ZNF771Q7L3S4 317 aaPredicted RBP6.51□□□□□ -1.37
CD44-236ENST00000533222 FAM169BQ8N8A8 192 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 ZCRB1Q8TBF4 217 aaKnown RBP6.51□□□□□ -1.37
CD44-236ENST00000533222 TMEM40Q8WWA1 233 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 ATG4CQ96DT6 458 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 SHDQ96IW2 340 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 DBNDD2Q9BQY9 259 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 CXorf56Q9H5V9 222 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 UPF2Q9HAU5 1272 aaKnown RBP6.51□□□□□ -1.37
CD44-236ENST00000533222 GRPEL1Q9HAV7 217 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 GMIPQ9P107 970 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 SUN2Q9UH99 717 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 RPS6KL1Q9Y6S9 549 aa6.51□□□□□ -1.37
CD44-236ENST00000533222 VIRMAQ69YN4 1812 aaKnown RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 CUX2O14529 1486 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 MEIS3P2A8K0S8 358 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 H0YHG0 523 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 PPFIA2O75334 1257 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 FRAT2O75474 233 aaPredicted RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 REC8O95072 547 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 PAX7P23759 505 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 CASQ1P31415 396 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 ARID5AQ03989 594 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 GNL2Q13823 731 aaKnown RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 SKOR2Q2VWA4 1001 aaPredicted RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 AMOTQ4VCS5 1084 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 SLC43A3Q8NBI5 491 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 BAHD1Q8TBE0 780 aaPredicted RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 PPP1R13LQ8WUF5 828 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 SEC16BQ96JE7 1060 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 KIF2CQ99661 725 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.5□□□□□ -1.37
CD44-236ENST00000533222 POLR3CQ9BUI4 534 aaPredicted RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 SRRTQ9BXP5 876 aaKnown RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 CHCHD3Q9NX63 227 aaKnown RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 SUFUQ9UMX1 484 aa6.5□□□□□ -1.37
CD44-236ENST00000533222 DDX49Q9Y6V7 483 aaKnown RBP6.5□□□□□ -1.37
CD44-236ENST00000533222 KDRP35968 1356 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ZMYM3Q14202 1370 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 EOMESO95936 686 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ACRP10323 421 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ABCD1P33897 745 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 COL9A2Q14055 689 aaPredicted RBP6.49□□□□□ -1.37
CD44-236ENST00000533222 PDCD2Q16342 344 aaPredicted RBP6.49□□□□□ -1.37
CD44-236ENST00000533222 ZSCAN26Q16670 478 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 CCDC181Q5TID7 509 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 LETMD1Q6P1Q0 360 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ANKRD13BQ86YJ7 626 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ZDHHC13Q8IUH4 622 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 SLFN12Q8IYM2 578 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 FAM184AQ8NB25 1140 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 CYB5D2Q8WUJ1 264 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 STAG1Q8WVM7 1258 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 ANAPC16Q96DE5 110 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 SPATA32Q96LK8 384 aa6.49□□□□□ -1.37
CD44-236ENST00000533222 MMTAG2Q9BU76 263 aaKnown RBP6.49□□□□□ -1.37
CD44-236ENST00000533222 CBFA2T2O43439 604 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 UBOX5O94941 541 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 TGFB1P01137 390 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 NME1P15531 152 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 GIPRP48546 466 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 YARSP54577 528 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 EIF6P56537 245 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 ICA1Q05084 483 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 TERF2Q15554 542 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 ZYXQ15942 572 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 ZKSCAN2Q63HK3 967 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 FAM214BQ7L5A3 538 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 NLRC3Q7RTR2 1065 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 CDH24Q86UP0 819 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 PHACTR4Q8IZ21 702 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 SAMD3Q8N6K7 520 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 FAM181AQ8N9Y4 354 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 DNAJB8Q8NHS0 232 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 RMDN2Q96LZ7 410 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 HEXIM2Q96MH2 286 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 SLC9A7Q96T83 725 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 GMLQ99445 158 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 CNNM2Q9H8M5 875 aa6.48□□□□□ -1.37
CD44-236ENST00000533222 UTP6Q9NYH9 597 aaKnown RBP6.48□□□□□ -1.37
CD44-236ENST00000533222 NPC1L1Q9UHC9 1359 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms