RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 RIOX2Q8IUF8 465 aa11.1□□□□□ -0.63
CHMP4A-205ENST00000531158 NECAB3Q96P71 396 aaPredicted RBP11.1□□□□□ -0.63
CHMP4A-205ENST00000531158 ARHGEF10LQ9HCE6 1279 aa11.1□□□□□ -0.63
CHMP4A-205ENST00000531158 SYNRGQ9UMZ2 1314 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 USP17L12C9JPN9 530 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 USP17L21D6R901 530 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 PQBP1O60828 265 aaKnown RBP11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 FAAP100Q0VG06 881 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 FAM83BQ5T0W9 1011 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 FGD4Q96M96 766 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 MMP19Q99542 508 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 NUP88Q99567 741 aaPredicted RBP11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 PAG1Q9NWQ8 432 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 NRBP1Q9UHY1 535 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 PPP1R9AQ9ULJ8 1098 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 RIPK3Q9Y572 518 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 SCN5AQ14524 2016 aa11.09□□□□□ -0.63
CHMP4A-205ENST00000531158 PIEZO1Q92508 2521 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 DNAJC25-GNG10A0A024R161 153 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 SLC25A27O95847 323 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 SNAI1O95863 264 aaPredicted RBP11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 RARBP10826 455 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 STAT3P40763 770 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 MRE11P49959 708 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 TMEM31Q5JXX7 168 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 CTR9Q6PD62 1173 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 C16orf59Q7L2K0 433 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 RNPC3Q96LT9 517 aaKnown RBP11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 PUS7LQ9H0K6 701 aaKnown RBP11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 BOLA2Q9H3K6 86 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 EPHX3Q9H6B9 360 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 ATP8A2Q9NTI2 1148 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 SLC5A4Q9NY91 659 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 DIS3Q9Y2L1 958 aaKnown RBP11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 TACC3Q9Y6A5 838 aa11.08□□□□□ -0.64
CHMP4A-205ENST00000531158 PTPRSQ13332 1948 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 TCF20Q9UGU0 1960 aaKnown RBP11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 AKR1A1P14550 325 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 ATP5JP18859 108 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 DNAJB2P25686 324 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 ACLYP53396 1101 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 FPGSQ05932 587 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 KCTD2Q14681 263 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 ANKRD33Q7Z3H0 272 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 RNF180Q86T96 592 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 CLASRPQ8N2M8 674 aaKnown RBP11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 KLHDC9Q8NEP7 349 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 KIF1BPQ96EK5 621 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 CCDC17Q96LX7 622 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 HAUS7Q99871 368 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 BCL11AQ9H165 835 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 SH2D4AQ9H788 454 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 KANSL2Q9H9L4 492 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 TBX21Q9UL17 535 aa11.07□□□□□ -0.64
CHMP4A-205ENST00000531158 GRXCR1A8MXD5 290 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 CTAGE5O15320 804 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 IFIT2P09913 472 aaKnown RBP11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 RAG1P15918 1043 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 RASA1P20936 1047 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 UBE3CQ15386 1083 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 CCDC85BQ15834 202 aaPredicted RBP11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 HSP90AB4PQ58FF6 505 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 MAMDC4Q6UXC1 1216 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 GAS2L1Q99501 681 aaPredicted RBP11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 KATNBL1Q9H079 304 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 ZBTB40Q9NUA8 1239 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 PPP4R2Q9NY27 417 aa11.06□□□□□ -0.64
CHMP4A-205ENST00000531158 IGKV6D-41A0A0C4DH26 115 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 NDUFB10O96000 172 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 PTGS1P23219 599 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 PBX2P40425 430 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 CDK7P50613 346 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 KCNA10Q16322 511 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 RASIP1Q5U651 963 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 SNRNP48Q6IEG0 339 aaKnown RBP11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 RPAP2Q8IXW5 612 aaPredicted RBP11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 TOX2Q96NM4 488 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 SLF1Q9BQI6 1058 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 TSEN34Q9BSV6 310 aaKnown RBP11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 TEX13BQ9BXU2 312 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 TANC1Q9C0D5 1861 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 ZNF576Q9H609 170 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 EPB41L4AQ9HCS5 686 aaPredicted RBP11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 STARD7Q9NQZ5 370 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 TMEM39AQ9NV64 488 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 SLC4A4Q9Y6R1 1079 aa11.05□□□□□ -0.64
CHMP4A-205ENST00000531158 GSG1L2A8MUP6 293 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 F5H6K3 240 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 RAD21O60216 631 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 TIMP1P01033 207 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 CST5P28325 142 aaPredicted RBP11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 KLRC3Q07444 240 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 AKNAD1Q5T1N1 836 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 STK11IPQ8N1F8 1099 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 STRBPQ96SI9 672 aaKnown RBP11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 GOPCQ9HD26 462 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 ZHX1Q9UKY1 873 aaPredicted RBP11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 CNPY2Q9Y2B0 182 aa11.04□□□□□ -0.64
CHMP4A-205ENST00000531158 COG6Q9Y2V7 657 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms