RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 KIF4BQ2VIQ3 1234 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 SLC4A8Q2Y0W8 1093 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 SLC10A5Q5PT55 438 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 IRF2BP1Q8IU81 584 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 LINC00116Q8NCU8 138 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 RASGRP4Q8TDF6 673 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 DISC1Q9NRI5 854 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 PCDHA4Q9UN74 947 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 CAPN2P17655 700 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 OAS2P29728 719 aaKnown RBP21.71■■□□□ 1.07
VPS28-213ENST00000530983 HNRNPH2P55795 449 aaKnown RBP21.71■■□□□ 1.07
VPS28-213ENST00000530983 LONRF2Q1L5Z9 754 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 NAALADL2Q58DX5 795 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 TYW1BQ6NUM6 668 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 STAG2Q8N3U4 1231 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 ANKRD20A12PQ8NF67 263 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 SH3GLB2Q9NR46 395 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 IL17RBQ9NRM6 502 aa21.71■■□□□ 1.07
VPS28-213ENST00000530983 VGLL3A8MV65 326 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 M0R2N6 131 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 TFRCP02786 760 aaKnown RBP21.7■■□□□ 1.06
VPS28-213ENST00000530983 USP17L8P0C7I0 530 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 KRT9P35527 623 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 RPS8P62241 208 aaKnown RBP21.7■■□□□ 1.06
VPS28-213ENST00000530983 TUBB2AQ13885 445 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 BRD3Q15059 726 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 TBC1D9BQ66K14 1250 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 SMARCC1Q92922 1105 aaPredicted RBP21.7■■□□□ 1.06
VPS28-213ENST00000530983 TUBB2BQ9BVA1 445 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 KAT14Q9H8E8 782 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 ZCCHC17Q9NP64 241 aaKnown RBP21.7■■□□□ 1.06
VPS28-213ENST00000530983 MCM9Q9NXL9 1143 aa21.7■■□□□ 1.06
VPS28-213ENST00000530983 TRIM49BA6NDI0 452 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 ADSSL1Q8N142 457 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 TFAP4Q01664 338 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 UBXN1Q04323 297 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 WWC2Q6AWC2 1192 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 PNMA1Q8ND90 353 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 JAG2Q9Y219 1238 aa21.69■■□□□ 1.06
VPS28-213ENST00000530983 PP2D1A8MPX8 630 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 H7C1D1 291 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 SMIM5Q71RC9 77 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 TXNRD3Q86VQ6 643 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 DGKHQ86XP1 1220 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 MSANTD4Q8NCY6 345 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 PNKPQ96T60 521 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 NAPGQ99747 312 aaPredicted RBP21.68■■□□□ 1.06
VPS28-213ENST00000530983 SLF1Q9BQI6 1058 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 PARP1P09874 1014 aaKnown RBP21.68■■□□□ 1.06
VPS28-213ENST00000530983 PMS1P54277 932 aaKnown RBP21.68■■□□□ 1.06
VPS28-213ENST00000530983 CHP1Q99653 195 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 TMEM60Q9H2L4 133 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 MYO1AQ9UBC5 1043 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 RAB21Q9UL25 225 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 ZNF831Q5JPB2 1677 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 MYH1P12882 1939 aa21.68■■□□□ 1.06
VPS28-213ENST00000530983 MAP2K7O14733 419 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 KCNQ4P56696 695 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 SLC35G1Q2M3R5 365 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 HNRNPLLQ8WVV9 542 aaKnown RBP21.67■■□□□ 1.06
VPS28-213ENST00000530983 MKRN1Q9UHC7 482 aaKnown RBP21.67■■□□□ 1.06
VPS28-213ENST00000530983 USP5P45974 858 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 DTHD1Q6ZMT9 781 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 MAD2L2Q9UI95 211 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 PCDHA6Q9UN73 950 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 REXO2Q9Y3B8 237 aaKnown RBP21.67■■□□□ 1.06
VPS28-213ENST00000530983 PCDHA8Q9Y5H6 950 aa21.67■■□□□ 1.06
VPS28-213ENST00000530983 SPATA31A5Q5VU36 1347 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 SPATA31A7Q8IWB4 1347 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 TTC26A0AVF1 554 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 KLRC4O43908 158 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 GRM4Q14833 912 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 C12orf60Q5U649 245 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 ANKRD2Q9GZV1 360 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 CCDC194A0A1B0GVG4 234 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 KCNB1Q14721 858 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 BEND6Q5SZJ8 279 aaPredicted RBP21.66■■□□□ 1.06
VPS28-213ENST00000530983 BARGINQ6ZT62 677 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 MB21D1Q8N884 522 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 ANKS1AQ92625 1134 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 DYNLL2Q96FJ2 89 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 TRERF1Q96PN7 1200 aa21.66■■□□□ 1.06
VPS28-213ENST00000530983 LGALS16A8MUM7 142 aa21.65■■□□□ 1.06
VPS28-213ENST00000530983 POTEB2H3BUK9 544 aa21.65■■□□□ 1.06
VPS28-213ENST00000530983 ST5P78524 1137 aa21.65■■□□□ 1.06
VPS28-213ENST00000530983 DZIP1Q86YF9 867 aaKnown RBP21.65■■□□□ 1.06
VPS28-213ENST00000530983 CYTH3O43739 400 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 NDUFA10O95299 355 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 AMPD2Q01433 879 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 SLC20A2Q08357 652 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 WHAMMP3Q1A5X7 153 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 INF2Q27J81 1249 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 TMED8Q6PL24 325 aaPredicted RBP21.64■■□□□ 1.06
VPS28-213ENST00000530983 ZNF507Q8TCN5 953 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 LRRC15Q8TF66 581 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 NLRP3Q96P20 1036 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 KBTBD4Q9NVX7 518 aa21.64■■□□□ 1.06
VPS28-213ENST00000530983 EPN1Q9Y6I3 576 aaPredicted RBP21.64■■□□□ 1.06
VPS28-213ENST00000530983 IRS2Q9Y4H2 1338 aa21.64■■□□□ 1.05
VPS28-213ENST00000530983 COL24A1Q17RW2 1714 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms